Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_027130.1
Length=172688
Score E
Sequences producing significant alignments: (Bits) Value
seq2 587 8e-163
seq1 529 2e-145
>seq2
Length=21306
Score = 587 bits (650), Expect = 8e-163
Identities = 732/996 (73%), Gaps = 8/996 (1%)
Strand=Plus/Plus
Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438
||||| | ||| ||||| |||| | ||||| || || |||| ||||| || || ||
Sbjct 19977 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 20036
Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497
||||| || || | ||| | ||||| ||||| || || | |||||| | || |||||
Sbjct 20037 ATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCC 20095
Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557
|| || || || || || || |||||||| || |||| || || | || || |||||
Sbjct 20096 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 20155
Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617
|| ||||| ||||| || | || |||| || || ||| | ||||| ||||| ||
Sbjct 20156 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAAT 20215
Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677
|||||||| ||||| ||||||| ||| | || || |||||||||| |||| | ||
Sbjct 20216 TTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 20275
Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737
| |||||| | | || | | || ||||| ||||| ||||| ||| | |||
Sbjct 20276 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 20335
Query 158738 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGC 158797
| |||||||| || ||||| ||| |||||||| || || || || || || | ||
Sbjct 20336 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 20395
Query 158798 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158857
||| ||| | |||| || | |||||||| ||| || |||| ||||||||| || ||
Sbjct 20396 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 20455
Query 158858 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158917
||||||||||| |||| |||| |||||||||| || || ||||||||||||||||| ||
Sbjct 20456 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCC 20515
Query 158918 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158977
|| || ||| | || || ||||| |||||||| || || || ||| ||||||||||||
Sbjct 20516 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 20575
Query 158978 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATG 159036
| || ||||| | | | || | ||||| || |||| || || || | |
Sbjct 20576 TTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 20634
Query 159037 GTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCG 159096
|||||| ||||| ||||| |||||||| ||||||||||| || || |||||||| || |
Sbjct 20635 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 20694
Query 159097 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 159156
| || |||||||||||||| ||| ||||||||||| ||||| || ||||||||||| |
Sbjct 20695 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAG 20754
Query 159157 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA--ACCATGGCATT 159214
|||| |||||||| || || |||||||| || | ||| || ||| || ||||||||
Sbjct 20755 CTGCTTGGCCTGTAGTGGGTATCTGGTTTACTG--CTTTAGGTATCAGTACTATGGCATT 20812
Query 159215 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAA 159274
|||||| || |||||||| || ||||| || | ||||| | || || ||||| | ||
Sbjct 20813 CAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAA 20872
Query 159275 CACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAA 159334
|| ||||| ||| | | |||||||| || |||||||||||||||||||| |||||
Sbjct 20873 TACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 20932
Query 159335 CGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 159370
|| || |||||||| || || || ||||||| |||
Sbjct 20933 TGCTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968
>seq1
Length=29327
Score = 529 bits (586), Expect = 2e-145
Identities = 736/1022 (72%), Gaps = 8/1022 (1%)
Strand=Plus/Plus
Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958
||||| || | || |||||| | |||| |||||||||||||| || ||||| ||
Sbjct 5445 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 5504
Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018
|| | || |||| ||| ||| | ||| | || |||||| | || || ||||| ||
Sbjct 5505 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 5564
Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCT 160077
| ||| |||||||||||||| | || ||||||||| | || || || || |||||
Sbjct 5565 GTAACTTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAA--TTTCT 5622
Query 160078 TA-CAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGG 160135
|| |||| ||||| ||||| ||| | | | | |||||| || || || || |||
Sbjct 5623 TAACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTATTGTTACTATGG 5681
Query 160136 GGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTT 160195
|||||||| || ||||| ||||| | ||| ||| | || || || |||| ||||
Sbjct 5682 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTT 5741
Query 160196 GTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCA 160255
|| || || ||||| || || | ||||| || |||||| | ||||| ||||| || ||
Sbjct 5742 GTTGCTCTGCATGGCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCT 5801
Query 160256 CG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTT 160314
|| ||| || | | || ||||| ||||| || || |||||||| || |||||||| ||
Sbjct 5802 CGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTT 5860
Query 160315 TGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTT 160374
||| |||||||| || || ||| | || ||||| ||||||| || || || ||
Sbjct 5861 TGTTTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTT 5920
Query 160375 TGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCT 160434
||| || ||||| || ||||||||| | | || ||||||||||||| || ||||||||
Sbjct 5921 TGGTGTAGCAGCTATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCT 5980
Query 160435 TAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCAT 160494
||||| || ||||||||||||||||| ||| || | || | || |||| | || ||
Sbjct 5981 GAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTAT 6040
Query 160495 CCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAA 160554
||||| | ||||||||| || || | | ||||||||| || |||||||| |||
Sbjct 6041 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCG 6100
Query 160555 GGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 160614
|| ||| | | || || | ||||| || ||||| ||||||||||| |||||||| ||
Sbjct 6101 TGCTTTTAACCCAACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTG 6160
Query 160615 GTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 160674
||| || ||||| || |||| ||||| || || || ||| | ||||| || ||||| ||
Sbjct 6161 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 6220
Query 160675 TGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCT 160734
||| || || | ||| | |||| | |||| | | ||| | || || || ||
Sbjct 6221 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCT 6280
Query 160735 TCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGAC 160794
||||| ||||| ||||| ||| || ||| | ||||| |||||||| |||||||||||
Sbjct 6281 ACGTGCCTACGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGAC 6340
Query 160795 CTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGA 160854
||||||||||| || || ||| | || ||||| | || || ||| | || || ||
Sbjct 6341 TTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGA 6400
Query 160855 CCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTA 160914
|| || ||||| ||| |||| ||||| || || ||||| || | || ||||| |||||
Sbjct 6401 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTA 6460
Query 160915 AT 160916
||
Sbjct 6461 AT 6462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552435458603840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |