Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_027132.1
Length=190768
Score E
Sequences producing significant alignments: (Bits) Value
seq2 578 5e-160
seq1 527 8e-145
>seq2
Length=21306
Score = 578 bits (640), Expect = 5e-160
Identities = 730/996 (73%), Gaps = 8/996 (1%)
Strand=Plus/Plus
Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920
||||| | ||| |||| ||| | || ||| | || | || ||||| ||||| ||
Sbjct 19977 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 20036
Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979
||||| ||||| || | | |||||| ||||| || || |||| ||| | || || ||
Sbjct 20037 ATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTCC 20095
Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039
||| || |||||||| || || |||||||| || |||| || || | || ||||||||
Sbjct 20096 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 20155
Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099
|| ||||| ||||| || | || | ||| || || ||| | ||||| || || ||
Sbjct 20156 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAAT 20215
Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159
|||||||||||||| | ||||| ||| | || || |||||||||| |||| | ||
Sbjct 20216 TTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 20275
Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219
| |||||| | | || | | || ||||| ||||||||||| ||| || |||
Sbjct 20276 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 20335
Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279
||| |||||||| || ||||| ||||||||| || || || || || ||||| | ||
Sbjct 20336 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 20395
Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339
|| ||| | |||| || | |||||||| ||| ||||||| ||||||||| || ||
Sbjct 20396 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 20455
Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399
||||||||||| |||| |||| |||||||||| || || ||||||||||||||||| ||
Sbjct 20456 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCC 20515
Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459
|| || ||| | || || ||||| |||||||| || || || ||| ||||||||| ||
Sbjct 20516 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 20575
Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATG 179518
| || ||||| | | ||| || | ||||| || || | || || || | |
Sbjct 20576 TTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 20634
Query 179519 GTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 179578
|||| | ||||| ||||| ||||| || ||||| ||||| || || ||||| || || |
Sbjct 20635 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 20694
Query 179579 GTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTG 179638
| || ||||||||||||||||| || |||||||| || || || ||||||||||| |
Sbjct 20695 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAG 20754
Query 179639 CTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCA--ACCATGGCGTT 179696
|||| ||||| || || || |||||||| |||||| | | || ||| || ||||| ||
Sbjct 20755 CTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAG--GTATCAGTACTATGGCATT 20812
Query 179697 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAA 179756
|||||| || |||||||| || ||||| || | |||| | ||||| ||||| ||||
Sbjct 20813 CAACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAA 20872
Query 179757 CACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAA 179816
|| ||||| || | | |||||||| | |||||||||||||||||||| |||||
Sbjct 20873 TACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 20932
Query 179817 CGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 179852
|| || |||||||| || || || ||||||| |||
Sbjct 20933 TGCTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968
>seq1
Length=29327
Score = 527 bits (584), Expect = 8e-145
Identities = 707/981 (72%), Gaps = 2/981 (0%)
Strand=Plus/Plus
Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110
||||| || || ||||| || ||||| || ||| | || |||| ||| ||| | ||
Sbjct 5475 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 5534
Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170
| || |||||| | || || ||| | ||||| || ||||| ||||| || | ||
Sbjct 5535 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGGTTGGCC 5594
Query 180171 TCTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGCTGACGC 180229
||||||| | ||||| ||| ||||||| | || || || || || |||||| |
Sbjct 5595 AGTTCCTATTTGGAAGGCTGTAA-TTTCTTAACAGCCGCAGTTTCTACTCCTGCTAATAG 5653
Query 180230 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTG 180289
| | | |||||| | | |||| ||||||||||| | || || |||| || ||
Sbjct 5654 TTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTG 5713
Query 180290 GTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGG 180349
||| ||| | || || || |||| ||| || ||||| || || || || | ||||| ||
Sbjct 5714 GTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGGCGCTTTTGGACTAATAGG 5773
Query 180350 ATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTAT 180409
|| ||| |||| || ||||| || || || | || | || ||||| ||||| ||
Sbjct 5774 TTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAAT 5833
Query 180410 TGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCA 180469
||||||||||| || || ||||| ||||| ||||| || || || ||||| || ||
Sbjct 5834 CGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGGCA 5893
Query 180470 GTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTT 180529
||| ||||||||||||| || |||||| |||||||| || ||||||||| | |||||
Sbjct 5894 GTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTAGATTCATCCTCTT 5953
Query 180530 TCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTAT 180589
| |||| || || || || ||||| || ||||| || ||||||||||||||||| ||| |
Sbjct 5954 TTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATATGATGGGAGTTGCCGGTGT 6013
Query 180590 ACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGA 180649
| | || | || ||||||| || || ||||| | ||||| || || || | | |||
Sbjct 6014 ATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGA 6073
Query 180650 AGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTA 180709
|||||| || ||||| || ||| || ||| | |||| |||| ||| ||||| ||
Sbjct 6074 AGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAACTCAAGCGGAAGAAACCTA 6133
Query 180710 CTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAA 180769
|| ||||||||||| |||||||| ||||| || ||||| || |||| ||||| || ||
Sbjct 6134 TTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 6193
Query 180770 GCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTAT 180829
|| ||| | ||||| || ||||| ||||| || || | ||| |||||| || |
Sbjct 6194 ACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCT 6253
Query 180830 TGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAG 180889
||| | | ||| | || || ||||| ||||| ||||| ||||| ||| || || |
Sbjct 6254 TGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACTTCGTTTCTCAGGAAATTCG 6313
Query 180890 AGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGG 180949
||||| ||||||||||| || ||||| ||||||||||| || || ||||| || |||||
Sbjct 6314 CGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGG 6373
Query 180950 ACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGA 181009
| || || ||| |||| || ||||| || || |||||| | || |||||||| ||
Sbjct 6374 TATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGA 6433
Query 181010 AGTTCTACCAAGAGGTAACGC 181030
||||||||| | || |||||
Sbjct 6434 GGTTCTACCACGTGGAAACGC 6454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610287464370240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |