Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq92 107 5e-18 seq22 102 2e-16 seq5 100 7e-16 seq121 96.9 8e-15 seq2 89.7 1e-12 seq34 87.8 4e-12 >seq92 Length=2672 Score = 107 bits (118), Expect = 5e-18 Identities = 108/139 (78%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 ||| || |||| ||||||| || | ||||| |||| ||||||||||||| ||||||||| Sbjct 2175 TATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGC 2116 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | || | |||||| || |||||||||| |||||| |||| | | |||| || Sbjct 2115 TTGTGCAGGCCCCCGTCAATTCCTTTGAGTTTCGGTCTTGCGACCGTACTCCCCAGGCGG 2056 Query 7844 AATATTT-ACGCGTTAGCT 7861 | | ||| ||||||||||| Sbjct 2055 AGTGTTTCACGCGTTAGCT 2037 >seq22 Length=5377 Score = 102 bits (112), Expect = 2e-16 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 372637 AGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATA 372696 || |||||||||||||||| |||||||||||||||| ||||||| |||| |||||||||| Sbjct 3950 AGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATA 3891 Query 372697 GGGTCTGACAC 372707 | ||||||||| Sbjct 3890 GAGTCTGACAC 3880 >seq5 Length=9041 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| || || ||| ||||||||||||| ||||||||||| | | | Sbjct 8563 TGGTAAGGTTCTTCGCTTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 8622 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| |||| | | |||| || ||| || |||| Sbjct 8623 CCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGCGGGATACTTAACGC 8682 Query 7855 GTTAGCT 7861 ||||||| Sbjct 8683 GTTAGCT 8689 >seq121 Length=2358 Score = 96.9 bits (106), Expect = 8e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 4474 ATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCT 4533 ||||| ||||||||||| || || ||||| ||||| |||||||| |||||||| |||||| Sbjct 2028 ATTTGTCCATCAGTAATGGAAATTACATTAGTAGGAATATAAGCCGAAACATCCCCTGCT 2087 Query 4534 TGTGTTTCGACAACAGGTAAGGCTGT 4559 |||||||| | || |||||||| || Sbjct 2088 TGTGTTTCAATGACGGGTAAGGCGGT 2113 >seq2 Length=21306 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||| ||||||||||| || || ||||| ||||| |||||||| |||||||| || Sbjct 10863 AATATTTGTCCATCAGTAATGGAAATTACATTAGTAGGAATATAAGCCGAAACATCTCCC 10804 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGT 4559 | ||| ||||| || | |||||||| || Sbjct 10803 GATTGAGTTTCAACTATTGGTAAGGCGGT 10775 >seq34 Length=4260 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/104 (81%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 6769 GAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAGC 6826 ||||| ||||||||||||| ||||||||| | |||||||| | || ||| | |||||| Sbjct 189 GAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAGC 131 Query 6827 AGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATG 6870 ||||| |||| || |||||||||||||| ||| ||| |||| Sbjct 130 AGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATG 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192446812392962