Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq92 107 5e-18
seq22 102 2e-16
seq5 100 7e-16
seq121 96.9 8e-15
seq2 89.7 1e-12
seq34 87.8 4e-12
>seq92
Length=2672
Score = 107 bits (118), Expect = 5e-18
Identities = 108/139 (78%), Gaps = 1/139 (1%)
Strand=Plus/Minus
Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783
||| || |||| ||||||| || | ||||| |||| ||||||||||||| |||||||||
Sbjct 2175 TATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGC 2116
Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843
|| | || | |||||| || |||||||||| |||||| |||| | | |||| ||
Sbjct 2115 TTGTGCAGGCCCCCGTCAATTCCTTTGAGTTTCGGTCTTGCGACCGTACTCCCCAGGCGG 2056
Query 7844 AATATTT-ACGCGTTAGCT 7861
| | ||| |||||||||||
Sbjct 2055 AGTGTTTCACGCGTTAGCT 2037
>seq22
Length=5377
Score = 102 bits (112), Expect = 2e-16
Identities = 65/71 (92%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 372637 AGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATA 372696
|| |||||||||||||||| |||||||||||||||| ||||||| |||| ||||||||||
Sbjct 3950 AGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATA 3891
Query 372697 GGGTCTGACAC 372707
| |||||||||
Sbjct 3890 GAGTCTGACAC 3880
>seq5
Length=9041
Score = 100 bits (110), Expect = 7e-16
Identities = 99/127 (78%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795
||||||| ||||| || || ||| ||||||||||||| ||||||||||| | | |
Sbjct 8563 TGGTAAGGTTCTTCGCTTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 8622
Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854
|||||| || |||||||||| | |||||| |||| | | |||| || ||| || ||||
Sbjct 8623 CCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGCGGGATACTTAACGC 8682
Query 7855 GTTAGCT 7861
|||||||
Sbjct 8683 GTTAGCT 8689
>seq121
Length=2358
Score = 96.9 bits (106), Expect = 8e-15
Identities = 73/86 (85%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 4474 ATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCT 4533
||||| ||||||||||| || || ||||| ||||| |||||||| |||||||| ||||||
Sbjct 2028 ATTTGTCCATCAGTAATGGAAATTACATTAGTAGGAATATAAGCCGAAACATCCCCTGCT 2087
Query 4534 TGTGTTTCGACAACAGGTAAGGCTGT 4559
|||||||| | || |||||||| ||
Sbjct 2088 TGTGTTTCAATGACGGGTAAGGCGGT 2113
>seq2
Length=21306
Score = 89.7 bits (98), Expect = 1e-12
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|||||||| ||||||||||| || || ||||| ||||| |||||||| |||||||| ||
Sbjct 10863 AATATTTGTCCATCAGTAATGGAAATTACATTAGTAGGAATATAAGCCGAAACATCTCCC 10804
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGT 4559
| ||| ||||| || | |||||||| ||
Sbjct 10803 GATTGAGTTTCAACTATTGGTAAGGCGGT 10775
>seq34
Length=4260
Score = 87.8 bits (96), Expect = 4e-12
Identities = 84/104 (81%), Gaps = 3/104 (3%)
Strand=Plus/Minus
Query 6769 GAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAGC 6826
||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||||
Sbjct 189 GAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAGC 131
Query 6827 AGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATG 6870
||||| |||| || |||||||||||||| ||| ||| ||||
Sbjct 130 AGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATG 87
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192446812392962
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |