Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_031235.1
Length=194437
Score E
Sequences producing significant alignments: (Bits) Value
seq2 666 0.0
seq1 518 4e-142
>seq2
Length=21306
Score = 666 bits (738), Expect = 0.0
Identities = 748/995 (75%), Gaps = 4/995 (0%)
Strand=Plus/Plus
Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254
|||||| | ||||| || || || | ||||| || || | || |||||||| |
Sbjct 19976 CTTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTT 20035
Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313
|||||| || || | ||| | ||||| |||| || || |||||||| | || ||||
Sbjct 20036 GATGATCCCTACCTTATTGACCGCAACT-TCTGTGTTTATTATTGCCTTCATTGCCGCTC 20094
Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373
|||| || || || || || || || ||||| ||| |||| || || | || |||||||
Sbjct 20095 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 20154
Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433
| || ||||| ||||| || ||||| |||| || || || | ||||| ||||| |
Sbjct 20155 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAA 20214
Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493
| |||||||||||||| | ||||| ||| | || || ||||||||||| |||| | |
Sbjct 20215 TTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTG 20274
Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553
| | |||||| | |||| || || |||||||||||||||||||| | || ||
Sbjct 20275 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCC 20334
Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613
|||| |||||||| |||||||| |||||| ||| || |||||||| ||||| ||||
Sbjct 20335 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 20394
Query 183614 CTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTA 183673
|||| ||| || |||| || | |||||||| |||| |||||||||||| || || |
Sbjct 20395 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 20454
Query 183674 TCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 183733
| ||| || || |||| ||| |||| ||||| || |||||||||||||| ||||| |
Sbjct 20455 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATC 20514
Query 183734 CCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACG 183793
| || |||||| | || || |||||||| ||||| ||||| || |||||||| ||||| |
Sbjct 20515 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 20574
Query 183794 GTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTAT 183852
|||| |||| |||| || | | | || | |||||||| || ||| || || |
Sbjct 20575 GTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 20633
Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912
||||||| ||||||||||| ||||| || || || || || || |||||||| || |||
Sbjct 20634 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 20693
Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTT 183972
|| || |||||||||| |||||| || ||||| || ||||| | |||||||||||
Sbjct 20694 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTA 20753
Query 183973 GCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTT 184032
||||||||||| || || || ||||||||||||||| | ||| | || |||||||||||
Sbjct 20754 GCTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTC 20813
Query 184033 AACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAAC 184092
||||| |||||||| || || ||||| || | ||||| | ||||| ||||| | ||
Sbjct 20814 AACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAAT 20873
Query 184093 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 184152
|| ||||| || || ||||||||||| ||||| |||||||| ||||| || ||||||
Sbjct 20874 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 20933
Query 184153 GCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 184187
||||| ||||||||||| || || ||||||| |||
Sbjct 20934 GCTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968
>seq1
Length=29327
Score = 518 bits (574), Expect = 4e-142
Identities = 719/1004 (72%), Gaps = 2/1004 (0%)
Strand=Plus/Plus
Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030
||||||||||| | | ||||| || || ||||| || ||||| || || | || |
Sbjct 5455 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 5514
Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090
|||| ||| ||| | || | || || ||| | || || ||||| ||||| || |
Sbjct 5515 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 5574
Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150
|||||||||| |||||||| ||| || | || || |||||| | || || ||||
Sbjct 5575 GGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTAACAGCCGCAG 5634
Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210
| || ||||||||| | | | | |||||| | | |||| ||||||||||| | |
Sbjct 5635 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCAC 5694
Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270
|||||||| | | || |||| ||| | || || || |||| |||||| || || || |
Sbjct 5695 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATG 5754
Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGT 186329
| || |||| || |||||||||||| | || || ||||| | ||| ||| | |
Sbjct 5755 GCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAAT 5814
Query 186330 ATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTC 186389
| || || || ||||| || || || ||||| || || ||||| |||||| |||||||
Sbjct 5815 -TGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTC 5873
Query 186390 CTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCA 186449
|| || || || || || ||||| |||||||| || || ||||| || |||||
Sbjct 5874 CTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCT 5933
Query 186450 ATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 186509
|| ||||||||| | | || | |||||||| || || |||||| |||| ||||| ||
Sbjct 5934 ATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCAT 5993
Query 186510 ATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACT 186569
|||||||| || || ||| | | || | |||| |||| | || || ||||||| ||||
Sbjct 5994 ATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACT 6053
Query 186570 GTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACG 186629
|||||||||||| | | ||||||||| || ||||| ||||| || || | |
Sbjct 6054 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCA 6113
Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTC 186689
|| |||| |||||||||||||| ||||||||||||||| | || ||||| || |||||
Sbjct 6114 ACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTT 6173
Query 186690 GGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATG 186749
|| |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || |
Sbjct 6174 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 6233
Query 186750 GGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGAC 186809
||| | |||| | | |||| | | ||| | || || ||||| ||||| || |||
Sbjct 6234 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGAC 6293
Query 186810 TTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAG 186869
|| || |||||| | | ||||| || |||||||| || ||||| ||||| |||||
Sbjct 6294 TTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 6353
Query 186870 AATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAA 186929
||||| ||||| || |||||| | || || |||||||| | ||||| || ||||||
Sbjct 6354 AATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 6413
Query 186930 AACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973
||| || |||| ||||| || || | ||| | || ||||||||
Sbjct 6414 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622027453814760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |