Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq2 715 0.0 seq1 556 1e-153 >seq2 Length=21306 Score = 715 bits (792), Expect = 0.0 Identities = 758/994 (76%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| ||||| ||||| || ||| | || |||| ||||| || || || Sbjct 19977 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 20036 Query 163988 ATGATTCCCTGCC-TGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 |||| ||||| || | || | || ||| | ||| || || || |||||||| | |||| Sbjct 20037 ATGA-TCCCTACCTTATTGACCGCAACTTC-TGTGTTTATTATTGCCTTCATTGCCGCTC 20094 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| || || || ||||| || || ||||| || |||| || || | || ||||||| Sbjct 20095 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 20154 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || ||||| ||||| |||| ||| ||||| ||||||||| ||||||| || || | Sbjct 20155 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAA 20214 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 | |||||||||||| | || |||||| | ||||| |||||||||| |||| ||| Sbjct 20215 TTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTG 20274 Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285 | | |||||| | |||| | | ||||||||||||||||||||| ||| || || Sbjct 20275 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCC 20334 Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345 |||| |||||||| ||||||||| || ||||| || |||||||| || || || | | Sbjct 20335 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 20394 Query 164346 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 164405 | || ||| || |||| || | |||||||| ||| ||||||| |||||||| || | Sbjct 20395 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 20454 Query 164406 TCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACC 164465 | ||||| || ||||||| |||| | || ||||||||||||||||||||||| ||||| | Sbjct 20455 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATC 20514 Query 164466 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164525 | || || ||| | |||||||| ||||| || |||||||| || |||||||| ||||| | Sbjct 20515 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 20574 Query 164526 GTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATG 164585 |||| |||| |||||| || | | || ||||| |||||||| || || | | Sbjct 20575 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 20634 Query 164586 GTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTG 164645 |||||| || ||||| || |||||||| || || ||||| |||||||| ||||| |||| Sbjct 20635 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 20694 Query 164646 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 164705 | || |||| |||||||| ||| ||||||||||| |||||| | ||||||||||| | Sbjct 20695 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAG 20754 Query 164706 CAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCA 164765 | || |||||||| || |||||||||||||||||| | || | || || |||||||||| Sbjct 20755 CTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCA 20814 Query 164766 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164825 |||| || |||||||| || ||||| || | | ||| | || || ||||| | || | Sbjct 20815 ACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATA 20874 Query 164826 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATG 164885 | ||||| || || ||||||||||| || || |||||||| ||||| || ||||||| Sbjct 20875 CTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 20934 Query 164886 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 |||| ||||||||||| || || ||||||| ||| Sbjct 20935 CTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968 >seq1 Length=29327 Score = 556 bits (616), Expect = 1e-153 Identities = 723/993 (73%), Gaps = 6/993 (1%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||||||||||||||| || ||||| || || | || ||||| ||| ||| | Sbjct 5472 AGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTC 5531 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 ||| | ||||||||| | || || || || || || || |||||||| || || | Sbjct 5532 GCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGGTTG 5591 Query 165300 GCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACTGCGGCAGTTTCTACTCCAGCAG 165357 || ||||||||| | | ||| || || |||||| || || |||||||||||||| || Sbjct 5592 GCCAGTTCCTATTTGGAAGGCTGTAA--TTTCTTAACAGCCGCAGTTTCTACTCCTGCTA 5649 Query 165358 ACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCC 165417 | | | | |||||| | || | |||||||||||||| | ||||| || || | | Sbjct 5650 ATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTC 5709 Query 165418 GCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTA 165477 | ||||| ||| | || || || ||||||||||| || || || || || |||| ||| | Sbjct 5710 GTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGGCGCTTTTGGACTAA 5769 Query 165478 TAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAAT 165536 ||||||||||| | || || ||||| || || ||| || || | | || ||||| ||| Sbjct 5770 TAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAAT-TGCGACCTTATAAT 5828 Query 165537 GCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTG 165596 || || || |||||||| || |||||||| || ||| ||| || || || ||||| || Sbjct 5829 GCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTA 5888 Query 165597 GGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTG 165656 || || || |||||||| ||||| || || || ||||| || || ||||| | Sbjct 5889 GGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTAGATTCATC 5948 Query 165657 CTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCA 165716 ||||| | ||||| || ||||| ||||||||||| || ||||| |||||||| || || Sbjct 5949 CTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATATGATGGGAGTTGCC 6008 Query 165717 GGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTG 165776 ||| | || |||| || ||||| | || |||||||||| ||| ||||| |||||||| Sbjct 6009 GGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTA 6068 Query 165777 TATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAA 165836 | |||||||||||| ||||| || || || ||| | ||||| | || ||| Sbjct 6069 TTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAACTCAAGCGGAAGAA 6128 Query 165837 ACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGC 165896 || ||||||||||||||||| ||||| || ||||| || || ||||| ||||||| | Sbjct 6129 ACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCC 6188 Query 165897 AATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGT 165956 ||||| |||||| | || ||||||||| | ||||| || || | || | |||| ||| Sbjct 6189 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 6248 Query 165957 TCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAG 166016 || |||| | | ||| | || || || || ||||| || || || || |||||||| Sbjct 6249 GCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACTTCGTTTCTCAGGAA 6308 Query 166017 ATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAAT 166076 ||| | || || || ||||| || ||||| || ||||| || ||||| || || | || Sbjct 6309 ATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAAC 6368 Query 166077 GAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCT 166136 ||||| | || || ||| |||| || ||| || |||||||| ||| || | |||||| Sbjct 6369 GAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 6428 Query 166137 GAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 || || || | ||| | || ||||| |||||| Sbjct 6429 GAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 6461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557615900934360