Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04]
5,523 sequences; 3,663,524 total letters
Query= NC_031242.1
Length=174307
Score E
Sequences producing significant alignments: (Bits) Value
seq2 715 0.0
seq1 556 1e-153
>seq2
Length=21306
Score = 715 bits (792), Expect = 0.0
Identities = 758/994 (76%), Gaps = 4/994 (0%)
Strand=Plus/Plus
Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987
|||||||||||| ||||| ||||| || ||| | || |||| ||||| || || ||
Sbjct 19977 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 20036
Query 163988 ATGATTCCCTGCC-TGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045
|||| ||||| || | || | || ||| | ||| || || || |||||||| | ||||
Sbjct 20037 ATGA-TCCCTACCTTATTGACCGCAACTTC-TGTGTTTATTATTGCCTTCATTGCCGCTC 20094
Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105
|||| || || || ||||| || || ||||| || |||| || || | || |||||||
Sbjct 20095 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 20154
Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165
| || ||||| ||||| |||| ||| ||||| ||||||||| ||||||| || || |
Sbjct 20155 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAA 20214
Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225
| |||||||||||| | || |||||| | ||||| |||||||||| |||| |||
Sbjct 20215 TTTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTG 20274
Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285
| | |||||| | |||| | | ||||||||||||||||||||| ||| || ||
Sbjct 20275 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCC 20334
Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345
|||| |||||||| ||||||||| || ||||| || |||||||| || || || | |
Sbjct 20335 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 20394
Query 164346 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 164405
| || ||| || |||| || | |||||||| ||| ||||||| |||||||| || |
Sbjct 20395 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 20454
Query 164406 TCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACC 164465
| ||||| || ||||||| |||| | || ||||||||||||||||||||||| ||||| |
Sbjct 20455 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATC 20514
Query 164466 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164525
| || || ||| | |||||||| ||||| || |||||||| || |||||||| ||||| |
Sbjct 20515 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 20574
Query 164526 GTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATG 164585
|||| |||| |||||| || | | || ||||| |||||||| || || | |
Sbjct 20575 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 20634
Query 164586 GTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTG 164645
|||||| || ||||| || |||||||| || || ||||| |||||||| ||||| ||||
Sbjct 20635 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 20694
Query 164646 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 164705
| || |||| |||||||| ||| ||||||||||| |||||| | ||||||||||| |
Sbjct 20695 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAG 20754
Query 164706 CAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCA 164765
| || |||||||| || |||||||||||||||||| | || | || || ||||||||||
Sbjct 20755 CTGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCA 20814
Query 164766 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164825
|||| || |||||||| || ||||| || | | ||| | || || ||||| | || |
Sbjct 20815 ACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATA 20874
Query 164826 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATG 164885
| ||||| || || ||||||||||| || || |||||||| ||||| || |||||||
Sbjct 20875 CTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 20934
Query 164886 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919
|||| ||||||||||| || || ||||||| |||
Sbjct 20935 CTCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968
>seq1
Length=29327
Score = 556 bits (616), Expect = 1e-153
Identities = 723/993 (73%), Gaps = 6/993 (1%)
Strand=Plus/Plus
Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239
|| ||||||||||||||||| || ||||| || || | || ||||| ||| ||| |
Sbjct 5472 AGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTC 5531
Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299
||| | ||||||||| | || || || || || || || |||||||| || || |
Sbjct 5532 GCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGGTTG 5591
Query 165300 GCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACTGCGGCAGTTTCTACTCCAGCAG 165357
|| ||||||||| | | ||| || || |||||| || || |||||||||||||| ||
Sbjct 5592 GCCAGTTCCTATTTGGAAGGCTGTAA--TTTCTTAACAGCCGCAGTTTCTACTCCTGCTA 5649
Query 165358 ACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCC 165417
| | | | |||||| | || | |||||||||||||| | ||||| || || | |
Sbjct 5650 ATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTC 5709
Query 165418 GCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTA 165477
| ||||| ||| | || || || ||||||||||| || || || || || |||| ||| |
Sbjct 5710 GTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATGGCGCTTTTGGACTAA 5769
Query 165478 TAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAAT 165536
||||||||||| | || || ||||| || || ||| || || | | || ||||| |||
Sbjct 5770 TAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTTCAAT-TGCGACCTTATAAT 5828
Query 165537 GCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTG 165596
|| || || |||||||| || |||||||| || ||| ||| || || || ||||| ||
Sbjct 5829 GCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTA 5888
Query 165597 GGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTG 165656
|| || || |||||||| ||||| || || || ||||| || || ||||| |
Sbjct 5889 GGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTAGATTCATC 5948
Query 165657 CTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCA 165716
||||| | ||||| || ||||| ||||||||||| || ||||| |||||||| || ||
Sbjct 5949 CTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCATATGATGGGAGTTGCC 6008
Query 165717 GGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTG 165776
||| | || |||| || ||||| | || |||||||||| ||| ||||| ||||||||
Sbjct 6009 GGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTA 6068
Query 165777 TATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAA 165836
| |||||||||||| ||||| || || || ||| | ||||| | || |||
Sbjct 6069 TTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCAACTCAAGCGGAAGAA 6128
Query 165837 ACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGC 165896
|| ||||||||||||||||| ||||| || ||||| || || ||||| ||||||| |
Sbjct 6129 ACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCC 6188
Query 165897 AATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGT 165956
||||| |||||| | || ||||||||| | ||||| || || | || | |||| |||
Sbjct 6189 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 6248
Query 165957 TCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAG 166016
|| |||| | | ||| | || || || || ||||| || || || || ||||||||
Sbjct 6249 GCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGACTTCGTTTCTCAGGAA 6308
Query 166017 ATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAAT 166076
||| | || || || ||||| || ||||| || ||||| || ||||| || || | ||
Sbjct 6309 ATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAAC 6368
Query 166077 GAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCT 166136
||||| | || || ||| |||| || ||| || |||||||| ||| || | ||||||
Sbjct 6369 GAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 6428
Query 166137 GAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169
|| || || | ||| | || ||||| ||||||
Sbjct 6429 GAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 6461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557615900934360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |