Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penstemon_20grinnellii_20[genbank_20GCA_5F000737425.1_202014-08-04] 5,523 sequences; 3,663,524 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq2 643 1e-179 seq1 554 5e-153 >seq2 Length=21306 Score = 643 bits (712), Expect = 1e-179 Identities = 740/993 (75%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||||||||| |||| || || |||||||| || |||| ||||| || || || Sbjct 19977 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 20036 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACT-TGTTTCATCATCGCCTTCATCGGTGCTCC 169470 |||||||| | | || | ||||| || ||||| || || |||||||| | ||||| Sbjct 20037 ATGATCCCTACCTTATTGACCGCAACTTCTGTGTTT-ATTATTGCCTTCATTGCCGCTCC 20095 Query 169471 CCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAA 169530 || || || || || || || || ||||| ||| |||| ||||| | || || ||||| Sbjct 20096 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 20155 Query 169531 CATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCAT 169590 || ||||| ||||| || | || |||| || |||||| | ||||| ||||| || Sbjct 20156 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCACTTTTATCCAAT 20215 Query 169591 CTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGT 169650 |||||||||||| | ||||||||||| ||||| |||||||||| |||| |||| Sbjct 20216 TTGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 20275 Query 169651 CTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCG 169710 | |||||| | | || | | ||||||||||||||||||||| | | || Sbjct 20276 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 20335 Query 169711 TCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGC 169770 |||||||||||| |||||||| |||||| || || ||||| ||||| || || |||| Sbjct 20336 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGC 20395 Query 169771 TGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTAT 169830 ||||||| || ||||||| |||| ||||| || ||||| | ||||||||| || || Sbjct 20396 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 20455 Query 169831 CTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCC 169890 || || || || |||| |||| | || ||||| ||||||||||||||||| ||||| || Sbjct 20456 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCC 20515 Query 169891 CTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGG 169950 || |||||| | || || || || || || || || || || || || || ||||| || Sbjct 20516 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 20575 Query 169951 TAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGG 170010 | | | || ||||| ||| | || | |||||||| || || || || || | || Sbjct 20576 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 20635 Query 170011 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGG 170070 ||||| ||||||||||| ||||| || || || ||||| |||||||| ||||| || || Sbjct 20636 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 20695 Query 170071 TCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGC 170130 || ||||||||||||| ||| ||||||||||| ||||| | ||||||||||| || Sbjct 20696 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCGCGTTCGTTACACTTCTTCCTAGC 20755 Query 170131 AGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAA 170190 || |||||||| || || |||||||| || ||| | ||| || || ||||| ||||| Sbjct 20756 TGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATCAGTACTATGGCATTCAA 20815 Query 170191 CCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 170250 ||| || |||||||| || ||||| || | | ||| | || || ||||| | || || Sbjct 20816 CCTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGCCAAGGCCGTGTAATTAATAC 20875 Query 170251 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGC 170310 ||||| || || ||||||||||| ||||| |||||||| ||||| || |||||||| Sbjct 20876 TTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 20935 Query 170311 TCACAACTTCCCTCTCGACCTCGCTGCTGCTGA 170343 ||| ||||||||||| || || ||||||| ||| Sbjct 20936 TCATAACTTCCCTCTAGATCTAGCTGCTGTTGA 20968 >seq1 Length=29327 Score = 554 bits (614), Expect = 5e-153 Identities = 730/1009 (72%), Gaps = 2/1009 (0%) Strand=Plus/Plus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 ||||||||||| | | || || || || ||||| || ||||| || || | || | Sbjct 5455 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 5514 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 |||| ||| ||| | || | || || ||| | || || || || ||||| || | Sbjct 5515 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 5574 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTG 170784 |||| ||||| || | || ||||| || | ||||| ||||||| | ||||| || | Sbjct 5575 GGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGTAATTTCTTAACAGCCGCAG 5634 Query 170785 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 170844 | || || |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 5635 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCAC 5694 Query 170845 AGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 170904 | || ||||| || |||| ||| | || || || |||| |||||| || || || | Sbjct 5695 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTGCATG 5754 Query 170905 GAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGG 170963 | || |||| || |||||||||||| | || || ||||| | ||| ||| || Sbjct 5755 GCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCT-GTTCAA 5813 Query 170964 ATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTC 171023 | |||| || ||||||||||| |||||||| || || ||||| ||||| || ||| Sbjct 5814 TTGCGACCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTC 5873 Query 171024 CTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCA 171083 || || ||||| || |||||||| |||||||||| |||||| ||||| || ||||| Sbjct 5874 CTGATTTATCCACTAGGGCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCT 5933 Query 171084 ATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCAT 171143 || || | ||| | ||||| | ||||| || || || ||||| ||||| ||||||||| Sbjct 5934 ATATTTAGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAACCCATTTCAT 5993 Query 171144 ATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACA 171203 |||||||| ||||| ||| | | |||| ||| ||||| | || |||||||||| ||| Sbjct 5994 ATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACT 6053 Query 171204 GTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACG 171263 ||||| |||||||| | ||||||||||||| ||||| || ||| || ||| || | Sbjct 6054 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTTCGTGCTTTTAACCCA 6113 Query 171264 ACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTT 171323 ||||| | |||||| || ||||| ||||||||||| || || || ||||| || || ||| Sbjct 6114 ACTCAAGCGGAAGAAACCTATTCCATGGTCACTGCGAACCGCTTTTGGTCCCAAATCTTT 6173 Query 171324 GGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATG 171383 || | || || |||||| |||||||| |||||||||||| | ||||| || || | Sbjct 6174 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 6233 Query 171384 GGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGAT 171443 ||| | ||| | ||| ||| || | | ||| | || || || || | || || || Sbjct 6234 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTGGCCCTGAACCTACGTGCCTACGAC 6293 Query 171444 TTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAG 171503 ||||| |||||| | | ||||| |||||||| || || ||||| ||||| ||||| Sbjct 6294 TTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 6353 Query 171504 AACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAA 171563 || || ||||| || |||||| |||| || |||||||| | ||| || || |||||| Sbjct 6354 AATATTCTATTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 6413 Query 171564 AACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||| || | ||||| ||||| |||||||| ||||| || || |||| || Sbjct 6414 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 6462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592157516102960