Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 >seq1 Length=52205531 Score = 120 bits (132), Expect = 3e-22 Identities = 561/875 (64%), Gaps = 27/875 (3%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || || | |||||| ||||| || ||||| ||||| |||| || |||||| |||| Sbjct 45627288 TGATAGTCTCCAACGCGCTTTTCAAAGAAGTTGGTTTTCCCCTGGAGTGATATAAGCTCC 45627229 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGT-----ACCCCAGTTCGGCGA 16790 || ||||||| ||||| ||||| || | | | |||| || | | | Sbjct 45627228 ATCCAATCAAAGGGATT-----CTGAACATCGTACACCTTCCCACACCCAAGCGCACCCA 45627174 Query 16791 TTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAA 16850 || | |||||| ||||| || ||||| || | ||| | || | ||||| || | | Sbjct 45627173 GCAACCGATCCGCAACAAACTCAATATACTGACTCATCAGCTCCCCATTCATACCCACCA 45627114 Query 16851 GA-CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATA 16909 | || | ||||| || || || |||| |||||| ||||||| || | | Sbjct 45627113 AAGCGCAG-GGAAGCGCGTCGCACACAAATTCCCTCTCTATGTCAACCGCGTCGCGCACA 45627055 Query 16910 ATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCG 16969 || || || ||||| | | | | | | || | ||| || || ||| Sbjct 45627054 ATCTCCTTCACGCGCTCCTCAGTGAGCTTCTTTCTGAGGAGAGAGTACAAGAGGCACGCG 45626995 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAACCCGG 17027 || ||||| || | || || |||| || |||| |||||||| || || || | |||| Sbjct 45626994 AAGTCGCAGTGAAGCCCTTCATCTC-GC-GATATGAGTTCGTTGGAGAAGGTGAGACCGG 45626937 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 ||||| || || ||||| | ||| ||||||| | ||| ||||| ||||| || | Sbjct 45626936 GCATCAAACCGCGCTTCTTGAGCCAGAATATCGAGCAGAAGCTGCCAGAGAAGAAGATTC 45626877 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCC 17147 |||||||| | || || |||| | || |||||| | | || || ||| ||| Sbjct 45626876 CCTCGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAAGAGTCGGTGGCGT--CGA-TCC 45626820 Query 17148 ATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA 17207 | | |||||| || || | | ||| || || |||| ||| || | Sbjct 45626819 AGCGCAAGGCCCACTGTGCCTTCTTGGCGACGCAGGGGATGGTGTCTACGGCACGGAACA 45626760 Query 17208 ATTTCTCTTTTTCCTGTAG-GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266 | | ||||| || | ||| | || || || || | ||| ||||||||||| ||| Sbjct 45626759 GGTGGTTCTTTTCG-GTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGGCTGTACATCTCG 45626701 Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTG 17325 ||||| |||||||| ||||| ||||| || ||||| |||||| ||||| || | | ||| Sbjct 45626700 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCA-CGGGCCTCGGAGACTTG 45626642 Query 17326 AACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAA 17385 | |||| ||| || | || || |||||| ||||| |||||| ||||| || Sbjct 45626641 GATTTCCTTCATGAAGCGGGCGGCGAGGTTTTCGAGAACGATACCGTCGGAGGCGGCAAA 45626582 Query 17386 AAACGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGTGTAAGAACGCGCCAGTCC 17443 || || | | || | ||||| | ||| | ||||| || | ||||| Sbjct 45626581 GAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGGTG--AGGGAGTCCCAGTGG 45626524 Query 17444 TTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTA 17503 | |||| ||| | || || ||||||| |||||| ||| || | || || || Sbjct 45626523 CGGAGGTCTTGGGAAAGGTCAACCTCTTCGGCGGTCCAGAAAGAGGCTTCGGCTTTCTTG 45626464 Query 17504 TACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||| | ||| || | |||||| || ||||| Sbjct 45626463 TACATTTCCCATATTTGGGGGTATTGGATTGGGAA 45626429 Score = 105 bits (116), Expect = 7e-18 Identities = 286/433 (66%), Gaps = 5/433 (1%) Strand=Plus/Plus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 ||| || ||||| ||||| || | |||||||| | | ||| |||||||| || || || Sbjct 19482584 CAGGCACGCGAAGTCGCAGTGGAGCCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGT 19482643 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 | || ||||| ||||| ||||| | ||| || || | | || || || || Sbjct 19482644 AAGTCCCGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATAGAGCAAAAGCTTCCGGAGAA 19482703 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 ||| || ||||||||| | || || || | | || |||||| | | | || | || Sbjct 19482704 GAAGATTCCCTCGACGCAGGCGAAGGCAACGATGCGCTCGGCGAAGGACTCGGCGGAGT- 19482762 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 ||| |||| | |||| | || || | | | ||| || || || ||||| Sbjct 19482763 -CGA-TCCAGCGTAGGGCCCAGTTAGCCTTCTTGGTGACGCAGGGAATAGTGTCAATGGC 19482820 Query 17200 CTTAAATA-ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258 | || | | |||| | || || || |||| || || || | ||| ||||||| Sbjct 19482821 GTGGAAGAGACGGGTCTTCTCTTTGGAG-TCTTTTATGTAGGTTTCAAGGAGGAGGCTGT 19482879 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 |||| |||||||| |||||||| ||||| |||||||| ||||| ||| ||||| || | Sbjct 19482880 ACATCTCGGAGTGAATGTTCTCGATGGCGATCTGAAAGCCGTAGAAGGCGCGGGCCTCGG 19482939 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 | || || ||| ||| || | || || ||||| |||||||| ||| | Sbjct 19482940 AGACCTGGACCTCCTTCATGAAACGGCCGGCAAGGTTTTCAAGGACGATGCCATCGGAGG 19482999 Query 17379 CGGCGAAAAACGC 17391 ||||||| || || Sbjct 19483000 CGGCGAAGAAGGC 19483012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517541019721440