Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq3 109 5e-19 >seq3 Length=52284309 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | || || |||| || || ||||||||| || |||| | | Sbjct 30378863 AATGCAAATATTTGTGAAGACTCTGACAGGAAAGACCATTACCTTGGAGGTGGAAAGCTC 30378922 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || | || ||| ||| || || ||||| | || |||||| Sbjct 30378923 TGATACAATTGACAATGTGAAAGCAAAGATTCAGGACAAGGAAGGCATACCACCAGATCA 30378982 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || ||||||||||| || || || ||||||||| || | || ||||| || Sbjct 30378983 ACAGAGGCTTATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGTACCCTTGCTGATTATAA 30379042 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAgg 29188 ||| ||||||||||| ||||||||| ||||||| ||| | || || || Sbjct 30379043 TATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGACTTCGTGGTGG 30379090 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || |||||||||||| || ||| || Sbjct 30284228 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACCATTACCTTGGAGGTGGAGAGTTCA 30284287 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || ||| ||||| || ||| | ||| ||| || Sbjct 30284288 GACACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 30284347 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || ||||| || |||||| | ||| | || ||||| ||| Sbjct 30284348 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTATAAT 30284407 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||| ||||||||||| ||| |||| || Sbjct 30284408 ATCCAGAAAGAATCTACTCTGCACTTGGTTTT 30284439 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| | ||||| ||||| ||||| ||||| ||| ||| ||| | | Sbjct 30274129 ATGCAGATATTCGTGAAAACTTTGACTGGCAAGACCATAACCCTCGAGGTAGAATCGTCT 30274188 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || || || ||||| ||| | || |||||| Sbjct 30274189 GACACCATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCTCCAGATCAG 30274248 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || || ||||| || |||||||| || ||| | ||| | |||||||| ||| Sbjct 30274249 CAGAGGCTGATTTTTGCTGGTAAACAACTTGAGGATGGAAGAACCCTTGCCGATTATAAT 30274308 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAgg 29188 ||||||||||| || || || ||| ||||| | || || |||| || Sbjct 30274309 ATTCAGAAGGAGTCCACCCTCCACCTGGTGCTTCGTTTGAGAGGTGG 30274355 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| ||||| | || || |||| || |||||||||||| || ||| | | Sbjct 30284683 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTGGAGGTGGAGAGCTC 30284742 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | || ||| ||| || |||||||| | || |||||| Sbjct 30284743 TGATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAAGAAGGCATCCCACCAGATCA 30284802 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || ||||| ||||| || |||||| |||||||| || |||| || ||||| Sbjct 30284803 GCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAA 30284862 Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165 ||||||||||||||| || || ||| Sbjct 30284863 TATTCAGAAGGAATCCACCCTCCAC 30284887 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 28955 TGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA 29014 |||| | ||||| || || | ||||| ||||| |||||||| || ||| ||| ||| Sbjct 30377945 TGTACAGATGCAGATCTTTGTGAAAACTTTGACAGGCAAAACTATCACCCTCGAGGTGGA 30378004 Query 29015 ACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGT 29074 | || | || || | | || | ||| || || || ||||||||| | || Sbjct 30378005 ATCCTCTGACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCC 30378064 Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||||| || || || || || || || || ||||| || ||| ||| | ||||| Sbjct 30378065 GGATCAGCAGAGGCTGATTTTCGCTGGTAAGCAACTCGAGGATGGTCGCACTCTTGCCGA 30378124 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||| || |||||||| ||||| ||| | ||| Sbjct 30378125 TTACAATATCCAAAAGGAATCCACTCTCCACCTCGTG 30378161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428332303995740