Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 seq3 105 8e-18 seq206 104 3e-17 seq7 102 9e-17 >seq2 Length=49040938 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 7435690 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 7435631 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 |||||| |||||||| || | ||| | || |||||||||| ||| || |||| | Sbjct 7435630 TATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 7435571 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || ||||| || | ||||||||||| ||||| || || || || Sbjct 7435570 GTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTTTTCCCCGTAAGGGTTTTCAC 7435511 Query 43172 AAAGATTTGCAT 43183 || || ||||| Sbjct 7435510 GAATATCTGCAT 7435499 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | |||| ||| | ||| |||||| || || ||||| ||||| Sbjct 4561657 TCCTCCACGGAGACGGAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 4561598 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| || || | || || |||||||| || ||||| || || ||||||||||| | || Sbjct 4561597 CAGGGTGCGACCATCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGG 4561538 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATT 43131 | | ||||||||| ||| |||| | | ||| | | | |||||| ||| | Sbjct 4561537 GATCCCTTCCTTGTCC-TGAATTTTGGCCTTCACGTTGTCGATGGTGTCGGAACTC---T 4561482 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || | || ||||| || || || | ||||| || ||||||||||| Sbjct 4561481 CCACCTCAAGAGTTATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 4561430 >seq3 Length=52284309 Score = 105 bits (116), Expect = 8e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || |||||||| | |||||| || | || |||||||||||||||||||||||| Sbjct 30284226 CCACCCCTTAAACGAAGCACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTAATCAGCA 30284167 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | |||| || || ||||| |||||||| || || | ||||||||| | || Sbjct 30284166 AGGGTTCTTCCGTCCTCAAGTTGCTTCCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGG 30284107 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | || ||| ||||| ||| || |||| | | | ||||| ||| || Sbjct 30284106 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTGTCTGAACTC---TCG 30284050 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || ||||| || || || | ||||| |||||||||||||| Sbjct 30284049 ACCTCAAGGGTAATGGTCTTCCCAGTCAAGGTCTTGACAAAGATTTGCAT 30284000 Score = 105 bits (116), Expect = 8e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || |||||||| | |||||| || | || |||||||||||||||||||||||| Sbjct 30378406 CCACCCCTTAAACGAAGCACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTAATCAGCA 30378347 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | |||| || || ||||| |||||||| || || | ||||||||| | || Sbjct 30378346 AGGGTTCTTCCGTCCTCAAGTTGCTTCCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGG 30378287 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | || ||| ||||| ||| || |||| | | | ||||| ||| || Sbjct 30378286 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTGTCTGAACTC---TCG 30378230 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || ||||| || || || | ||||| |||||||||||||| Sbjct 30378229 ACCTCAAGGGTAATGGTCTTCCCAGTCAAGGTCTTGACAAAGATTTGCAT 30378180 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| ||||||||||| || ||||| || | || || || |||||||||||||| Sbjct 30378142 TCCTTTTGGATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCAGCGAAA 30378083 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | |||||| || | || | | || |||||| ||| || |||| | Sbjct 30378082 ATCAGCCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTA 30378023 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| |||||||| |||| ||||| |||||||| || | || || ||| Sbjct 30378022 TCAATGGTGTCAGAGGATTCCACCTCGAGGGTGATAGTTTTGCCTGTCAAAGTTTTCACA 30377963 Query 43173 AAGATTTGCATTTTTAC 43189 ||||| ||||| | ||| Sbjct 30377962 AAGATCTGCATCTGTAC 30377946 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||||||| | |||||| || | ||| |||||| |||||||| ||||| || Sbjct 30309785 CCACCTCTTAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTATAATCTGCA 30309726 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | | || || || || |||||||| || || || | |||||| || | || Sbjct 30309725 AGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCCGGAGGG 30309666 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||| |||||| ||| || ||||| | | | ||||| |||||| || Sbjct 30309665 ATACCCTCTTTGTCCTGGATCTTAGCTTTGACATTATCAATAGTGTCAGACGATTCTACC 30309606 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || ||||| ||||| || | || || || || || ||||| Sbjct 30309605 TCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30309559 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| ||||||||||| || ||||| || | || || || |||||||| || || Sbjct 30283962 TCCTTTTGGATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAG 30283903 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || |||| ||||||||| | || | | |||||||| | ||| | || | ||| | | Sbjct 30283902 ATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGT-CTTGAATCTTGGCTTTCACGTT 30283844 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| |||||| || |||| || ||||| ||||| || | || || || Sbjct 30283843 ATCAATGGTGTCAGACGATTCTACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCAC 30283784 Query 43172 AAAGATTTGCATTTTTAC 43189 || || ||||| | ||| Sbjct 30283783 GAATATCTGCATCTGTAC 30283766 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||||||||| || | ||| ||||| || ||||| |||||||| || || ||| | Sbjct 30379078 CGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTATAATCAGCAAGGGTACGCCCA 30379019 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || | ||| || || | || | || |||||| Sbjct 30379018 TCTTCCAGCTGCTTTCCGGCAAAGATAAGCCTCTGTTGATCTGGTGGTATGCCTTCCTTG 30378959 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| ||| | |||| ||| | | | | || || ||| |||||| || | || Sbjct 30378958 TCC-TGAATCTTTGCTTTCACATTGTCAATTGTATCAGAGCT---TTCCACCTCCAAGGT 30378903 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||||| || || || || ||||| ||||| ||||||||| Sbjct 30378902 AATGGTCTTTCCTGTCAGAGTCTTCACAAATATTTGCATT 30378863 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||| ||||||||||| || ||||| || | || || || |||||||| || || Sbjct 30314260 TCTTTTTGGATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAG 30314201 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || |||| ||||||||| | || | | |||||||| | ||| | || | ||| | | Sbjct 30314200 ATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGT-CTTGAATCTTGGCTTTCACGTT 30314142 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| |||||| || |||| || ||||| ||||| || | || || || Sbjct 30314141 ATCAATGGTGTCAGACGATTCTACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCAC 30314082 Query 43172 AAAGATTTGCATTTTTAC 43189 || || ||||| | ||| Sbjct 30314081 GAATATCTGCATCTATAC 30314064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||||| |||| ||| ||||| || || || |||||||| || || ||| | || Sbjct 30284668 CAACACCAGGTGCAGAGTGGATTCCTTCTGGATGTTATAATCAGCAAGGGTACGCCCATC 30284609 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||||||| ||||| || || || | ||| || || | || | || |||||||| Sbjct 30284608 TTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGTTGATCTGGTGGTATGCCTTCCTTGTC 30284549 Query 43091 CATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| | |||| || | | | | ||||| ||| || || | || |||| Sbjct 30284548 C-TGAATCTTTGCCTTCACATTATCGATGGTGTCAGAACTTTCAACCTCCAAAGTAATGG 30284490 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || || || | |||||||||||| ||||||||| Sbjct 30284489 TCTTTCCTGTCAACGTCTTTACAAAAATTTGCATT 30284455 >seq206 Length=5001 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 4747 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 4688 Query 60126 TACTACCGAGGATTG 60140 |||||||||||| || Sbjct 4687 TACTACCGAGGACTG 4673 >seq7 Length=51758522 Score = 102 bits (112), Expect = 9e-17 Identities = 142/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| ||||| || || || || ||| | || || |||||||| |||||||| Sbjct 4236716 TCCTTTTGAATGTTGTAGTCGGCGAGGGTGCGCCCATCCTCCAGCTGCTTTCCAGCGAAG 4236657 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| || |||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 4236656 ATGAGACGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 4236598 Query 43113 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | ||||| |||| || || |||| |||||||| || || || || ||||| Sbjct 4236597 GTCAATAGTGTCGGAGCTC---TCGACCTCGAGAGTGATGGTCTTTCCGGTCAGTGTCTT 4236541 Query 43169 TACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 4236540 AACGAAGATCTGCAT 4236526 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | || |||||| || || || || || || || |||| | Sbjct 4237197 ACGCAACACCAAGTGGAGAGTTGACTCCTTCTGGATGTTATAGTCGGCGAGGGTCCTTCC 4237138 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||| || |||||||| || | | ||||||||| | || | | |||||| Sbjct 4237137 ATCCTCCAGCTGTTTTCCAGCGAAGATCAACCTCTGCTGGTCCGGGGGTATTCCCTCCTT 4237078 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 |||| ||| || || | ||| | | | ||||| |||| ||||| |||| | Sbjct 4237077 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAGCTC---TCCACCTCGAGGG 4237022 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| ||||| || || ||||| |||||||| ||||| Sbjct 4237021 TGATGGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCAT 4236982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571812539414240