Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2 113 3e-20 seq7 95.1 8e-15 seq3 95.1 8e-15 >seq2 Length=49040938 Score = 113 bits (124), Expect = 3e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| || ||| |||| || | |||||| || ||||| Sbjct 7435689 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAT 7435630 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| |||||||| || | |||| | || ||||||||| ||||| ||| | || Sbjct 7435629 ATGAGACGCTGCTGATCCGGCGGG-ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 7435571 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | || || || || | ||||||||||| || || || |||||||| Sbjct 7435570 GTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTTTTCCCCGTAAGGGTTTTCAC 7435511 Query 34378 AAAGATCTGCATCGCT 34393 || |||||||||||| Sbjct 7435510 GAATATCTGCATCGCT 7435495 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || || ||||| ||||||||||||| Sbjct 7451135 CCACCGCGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 7451076 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||| || ||||| ||||| |||||||| || || Sbjct 7451075 AGGGTGCGACCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGTGGG 7451016 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | || | || || || Sbjct 7451015 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCTGAAGACTCCACC 7450956 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | ||||| || || || ||||| |||||||| || |||||||| ||| Sbjct 7450955 TCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTCACGAATATCTGCATTGCT 7450905 >seq7 Length=51758522 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || ||| ||||| ||||||||||||| || || | || Sbjct 4236965 AGAACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCATCC 4236906 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || ||||| || | || ||||||||| ||| | | ||||||||| Sbjct 4236905 TCCAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 4236846 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || || || | |||||||| Sbjct 4236845 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTC 4236786 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| ||||| ||||||||||||||||| Sbjct 4236785 TTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 4236754 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| | ||| || ||||| ||||| ||||||| Sbjct 4237208 CCACCACGAAGACGCAACACCAAGTGGAGAGTTGACTCCTTCTGGATGTTATAGTCGGCG 4237149 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | || |||| ||| || || ||||| || | || ||||||||| ||| Sbjct 4237148 AGGGTCCTTCCATCCTCCAGCTGTTTTCCAGCGAAGATCAACCTCTGCTGGTCCGGGGGT 4237089 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | || | || || Sbjct 4237088 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGCTCTCCACC 4237029 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| ||||| ||||||||||||||||| Sbjct 4237028 TCGAGGGTGATGGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCAT 4236982 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| || || ||||||||||||| || || | || |||| |||||| || ||||| Sbjct 4236717 TTCCTTTTGAATGTTGTAGTCGGCGAGGGTGCGCCCATCCTCCAGCTGCTTTCCAGCGAA 4236658 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| || |||||||| ||| | | |||||||| ||||| ||| | | Sbjct 4236657 GATGAGACGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 4236598 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | |||| ||||| || | |||||||| || ||||| || || || || Sbjct 4236597 GTCAATAGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTTCCGGTCAGTGTCTTAAC 4236538 Query 34378 AAAGATCTGCATC 34390 |||||||||||| Sbjct 4236537 GAAGATCTGCATC 4236525 >seq3 Length=52284309 Score = 95.1 bits (104), Expect = 8e-15 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || ||||| || | || || ||||| | || ||| ||||| ||||||||||| Sbjct 30315212 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 30315153 Query 34219 GGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGA 34277 | | || || || | || ||||| || || || || ||||| |||| |||||| || Sbjct 30315152 TGCCAAGGTG-CGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTG 30315094 Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGAT 34336 || | || ||||||||| ||| |||||||| | || | || | ||| | Sbjct 30315093 GTGGGATGCCCTCCTTGTCCTGAATC-TTTGCTTTCACATTATCAATTGTATCAGAGCTC 30315035 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||| || |||||||| || || ||||| |||||||| |||||||| Sbjct 30315034 TCCACCTCCAAGGTAATGGTTTTCCCTGTCAGAGTCTTCACAAATATCTGCAT 30314982 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| ||||||| ||| | ||| | |||| ||| ||||| ||||| || || | Sbjct 30275039 TCCACCGCGAAGCCTCAACACTAAGTGCAGAGTAGATTCCTTCTGGATGTTATAATCCGC 30274980 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || |||| |||||| || || || ||||||| ||||||||| || Sbjct 30274979 AAGGGTACGCCCATCTTCCAGCTGCTTCCCAGCAAATATGAGCCTCTGCTGGTCTGGTGG 30274920 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| |||||| ||| | || | || | || | ||| || Sbjct 30274919 GATGCCTTCCTTGTCCTGAATCTTTGCCTTCACATTATCAATAGTGTCAGAGCTTTCAAC 30274860 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || | || || | |||||||||||| || ||||| Sbjct 30274859 CTCCAAAGTTATAGTCTC-CCAGTTAAAGTTTTCACAAAAATTTGCAT 30274813 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256 ||||||||| ||||||||||| | | || || || | || ||||| || || || || | Sbjct 30310434 TTCTTTCTGAATGTTGTAGTCTGCCAAGGTG-CGACCATCTTCCAATTGTTTACCAGCAA 30310376 Query 34257 AAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGA 34315 |||| |||| |||||| || || | || ||||||||| ||| |||||||| | | Sbjct 30310375 AAATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATC-TTTGCTTTCACA 30310317 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | || | ||| | || || |||| || ||||| || || || ||||| ||| Sbjct 30310316 TTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTC 30310257 Query 34376 ACAAAGATCTGCAT 34389 ||||| |||||||| Sbjct 30310256 ACAAATATCTGCAT 30310243 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | ||| ||| || || || ||||| |||| || || | || Sbjct 30378163 AGCACGAGGTGGAGAGTGGATTCCTTTTGGATATTGTAATCGGCAAGAGTGCGACCATCC 30378104 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGT 34295 || | ||||| || |||||||| |||| |||||| || || || || ||| |||| Sbjct 30378103 TCGAGTTGCTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAGGGATACCTTCT--TTGT 30378046 Query 34296 CGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 | ||||| ||| | || | || | || | ||||| || || | ||||| | Sbjct 30378045 CCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGAGGATTCCACCTCGAGGGTGATAG 30377986 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||| || | |||||||||||||||||||||| Sbjct 30377985 TTTTGCCTGTCAAAGTTTTCACAAAGATCTGCATC 30377951 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256 ||| ||||| ||||||||||| | | || || || | || ||||| || || || || | Sbjct 30275231 TTCCTTCTGAATGTTGTAGTCTGCCAAGGTG-CGACCATCTTCCAATTGTTTCCCAGCAA 30275173 Query 34257 AAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGA 34315 |||| |||| |||||| || || | || ||||||||| ||| |||||||| | | Sbjct 30275172 AAATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATC-TTTGCTTTCACA 30275114 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | || | ||| | || || |||| || ||||| || || || ||||| ||| Sbjct 30275113 TTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTC 30275054 Query 34376 ACAAAGATCTGCAT 34389 ||||| |||||||| Sbjct 30275053 ACAAATATCTGCAT 30275040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069212292480