Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 159 4e-34 seq2 86.0 8e-12 >seq1 Length=52205531 Score = 159 bits (176), Expect = 4e-34 Identities = 410/616 (67%), Gaps = 10/616 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || |||||||| | || | |||||| || || || ||| Sbjct 19482588 CACGCGAAGTCGCAGTGGAGCCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTAAGT 19482647 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCGGAAAAGAA 33700 || ||||| ||||| ||||| || ||||| || || || || || | | ||||| ||||| Sbjct 19482648 CCCGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATAGA-GCAAAAGCTTCCGGAGAAGAA 19482706 Query 33701 GATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGCTGTCAT 33756 |||||| || || ||| || ||||||| | | ||| | | || ||||| ||| Sbjct 19482707 GATTCCCTCGAC-GCAGGCGAAGGCAACGATGCGCTCGGCGAAGGACTCGGCGGAGTC-- 19482763 Query 33757 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816 ||||| | | ||||| | |||||||| | || || || || || || ||||| | Sbjct 19482764 -GATCCAGCGTAGGGCCCAGTTAGCCTTCTTGGTGACGCAGGGAATAGTGTCAATGGCGT 19482822 Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 |||||| | | || || || ||||| | || || || | | || || |||| Sbjct 19482823 GGAAGAGACGGGTCTTCTCTTTGGAGTCTTTTATGTAGGTTTCAAGGAGGAGGCTGTACA 19482882 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 | || || |||||||| || ||||| |||||||| |||||||| | ||||||| | Sbjct 19482883 TCTCGGAGTGAATGTTCTCGATGGCGATCTGAAAGCCGTAGAAGGCGCGGGCCTCGGAGA 19482942 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 ||| || || | || || | || | |||||| || || ||||| ||| | Sbjct 19482943 CCTGGACCTCCTTCATGAAACGGCCGGCAAGGTTTTCAAGGACGATGCCATCGGAGGCGG 19483002 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 34056 | || || || | || || | || |||| ||| | ||||| | | ||||| Sbjct 19483003 CGAAGAAGGCGAGGACGTGGGTGATGAAATGGCGCTCGCCATCGGTTAGAGTCTCCCAAT 19483062 Query 34057 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 34116 ||| || | || | || || || ||| | ||||| || || || || || || | Sbjct 19483063 GCCGGATGTCCTGCGAGAGGTCGACCTCCTCCGCCGTCCAGAAAGAGGCTTCAGCTTTCT 19483122 Query 34117 TATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTG 34176 | ||||| | |||||| | | |||||||||||||| || |||| || || || | Sbjct 19483123 TGTACATTTCCCAGATTTGGGGGTATTGGATTGGGAACATGCAGAATCGATCAGGGTTAG 19483182 Query 34177 GTGCAAGGATAGGTTC 34192 | || | || ||| || Sbjct 19483183 GGGCCAAGAGAGGCTC 19483198 Score = 107 bits (118), Expect = 2e-18 Identities = 237/353 (67%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || || || |||| || | |||||| || || ||||| Sbjct 45627000 CACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGA 45626941 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| | || ||||| || ||||| ||||| || ||| || || |||||| Sbjct 45626940 CCGGGCATCAAACCGCGCTTCTTGAGCCAGAATATCGAGCAGAAGCTGCCAGAGAAGAAG 45626881 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 33760 ||||| || || ||| || ||||| | | | ||| | || | || || | | || Sbjct 45626880 ATTCCCTCGAC-GCAGGCGAAGGCGACGATGCGCTCGGCGAAAGAGTCGGTGGCGTCGAT 45626822 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||| ||||| | |||||||| || || || || || |||| |||| || Sbjct 45626821 CCAGCGCAAGGCCCACTGTGCCTTCTTGGCGACGCAGGGGATGGTGTCTACGGCACGGAA 45626762 Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880 || | ||| ||||| | ||||| | || || || | | || || ||||| || Sbjct 45626761 CAGGTGGTTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGGCTGTACATCTC 45626702 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 || || ||||| || ||||| ||||| || ||||||||| | ||||||| Sbjct 45626701 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGGGCCTCGG 45626649 >seq2 Length=49040938 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 ||| || ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 43314766 TCCCCCTTGATCAACATAACGAGCAGTATCATTGAACACACGCAGCATTGGAACAATACC 43314825 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 |||||| | ||||| || || ||| || | || ||||||||||||| || || Sbjct 43314826 ATTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATTGTGAACAGA 43314885 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| ||||| || || ||| || | || || ||| || |||||||| || Sbjct 43314886 AACACCAATTCCTCCAGCTGATTTGCTAATGATAGCACACTCTTTCAAAGTGTCATATAT 43314945 Query 63602 GCCTTCTATGCTATCATCGATCATG 63626 || ||||| |||||||| ||||| Sbjct 43314946 TCCCTCTATACTATCATCTTTCATG 43314970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629812026114240