Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-31 seq2 100 4e-16 >seq1 Length=52205531 Score = 150 bits (166), Expect = 2e-31 Identities = 384/579 (66%), Gaps = 8/579 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || ||||| || | || | ||||||||| || || ||| Sbjct 19482588 CACGCGAAGTCGCAGTGGAGCCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTAAGT 19482647 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||| ||||| ||||| || ||||| || ||||| ||||| | | || || ||||| Sbjct 19482648 CCCGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATAGA-GCAAAAGCTTCCGGAGAAGAA 19482706 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCACTGTCATG 42240 |||||| || || || ||||||| | | ||| | | || |||| ||| Sbjct 19482707 GATTCCCTCGACGCAGGCGAAGGCAACGATGCGCTCGGCGAAGGACTCGGCGGAGTC--- 19482763 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| | | ||||| | |||||||| | || || || || || || ||||| | Sbjct 19482764 GATCCAGCGTAGGGCCCAGTTAGCCTTCTTGGTGACGCAGGGAATAGTGTCAATGGCGTG 19482823 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 |||||| | | || || || ||||| | || || || | | || || ||||| Sbjct 19482824 GAAGAGACGGGTCTTCTCTTTGGAGTCTTTTATGTAGGTTTCAAGGAGGAGGCTGTACAT 19482883 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 || || |||||||| || ||||| |||||||| |||||||| | |||||||| || Sbjct 19482884 CTCGGAGTGAATGTTCTCGATGGCGATCTGAAAGCCGTAGAAGGCGCGGGCCTCGGAGAC 19482943 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 ||| || || | || || | || | ||||| || || || || ||| || Sbjct 19482944 CTGGACCTCCTTCATGAAACGGCCGGCAAGGTTTTCAAGGACGATGCCATCGGAGGCGGC 19483003 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATC 42540 || || || | || || | || |||| ||| | |||| | | ||||| Sbjct 19483004 GAAGAAGGCGAGGACGTGGGTGATGAAATGGCGCTCGCCATCGGTTAGAGTCTCCCAATG 19483063 Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600 ||| || | || | || || || || ||||||| || || ||||| || || || Sbjct 19483064 CCGGATGTCCTGCGAGAGGTCGACCTCCTCCGCCGTCCAGAAAGAGGCTTCAGCTTTCTT 19483123 Query 42601 ATACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 ||||| | |||||| | | ||||| |||||||| || Sbjct 19483124 GTACATTTCCCAGATTTGGGGGTATTGGATTGGGAACAT 19483162 Score = 127 bits (140), Expect = 3e-24 Identities = 399/613 (65%), Gaps = 4/613 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || || ||||||| || | ||||||||| || ||||| Sbjct 45627000 CACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGA 45626941 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| | || ||||| || ||||| ||||| || ||| | | | ||||| ||||| Sbjct 45626940 CCGGGCATCAAACCGCGCTTCTTGAGCCAGAATATCGA-GCAGAAGCTGCCAGAGAAGAA 45626882 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 |||||| || || || ||||| | | | ||| | || | | || | | || Sbjct 45626881 GATTCCCTCGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAAGAGTCGGTGGCGTCGAT 45626822 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| ||||| | |||||||| || || || || || |||| |||| || Sbjct 45626821 CCAGCGCAAGGCCCACTGTGCCTTCTTGGCGACGCAGGGGATGGTGTCTACGGCACGGAA 45626762 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 || | ||| ||||| | ||||| | || || || | | || || ||||| || Sbjct 45626761 CAGGTGGTTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGGCTGTACATCTC 45626702 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || || ||||| || ||||| ||||| || ||||||||| | |||||||| || || Sbjct 45626701 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGGGCCTCGGAGACTTG 45626642 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 | ||| | || || | || | |||||| || || ||||| ||| ||||| Sbjct 45626641 GATTTCCTTCATGAAGCGGGCGGCGAGGTTTTCGAGAACGATACCGTCGGAGGCGGCAAA 45626582 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA-TTCCAATCAT 42542 || || | || || | || || | ||| ||| | | | | | ||| | Sbjct 45626581 GAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCG-CCGTCGGTGAGGGAGTCCCAGTGGC 45626523 Query 42543 TGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTAT 42602 || |||| || | || || ||||| | ||||| || || ||||| || || || | Sbjct 45626522 GGAGGTCTTGGGAAAGGTCAACCTCTTCGGCGGTCCAGAAAGAGGCTTCGGCTTTCTTGT 45626463 Query 42603 ACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTG 42662 |||| | ||| || | | ||||| |||||||| || || | | ||| || || | Sbjct 45626462 ACATTTCCCATATTTGGGGGTATTGGATTGGGAACATGCAGAAGCGGTCTGGGTTCGGGG 45626403 Query 42663 CAAGGATCGGTTC 42675 | |||| ||||| Sbjct 45626402 CCAGGAGTGGTTC 45626390 >seq2 Length=49040938 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| || ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 43314766 TCCCCCTTGATCAACATAACGAGCAGTATCATTGAACACACGCAGCATTGGAACAATACC 43314825 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || ||| || || || |||||||||||||| || || Sbjct 43314826 ATTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATTGTGAACAGA 43314885 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| || | || || ||| || || ||||| || Sbjct 43314886 AACACCAATTCCTCCAGCTGATTTGCTAATGATAGCACACTCTTTCAAAGTGTCATATAT 43314945 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 ||||||||||||||||| ||||| Sbjct 43314946 TCCCTCTATACTATCATCTTTCATG 43314970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671133260418080