Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 4e-15 seq7 87.8 2e-12 seq5 86.0 6e-12 >seq3 Length=52284309 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| |||||| | || || || | || || || || || || || ||||| Sbjct 30309786 GCCACCTCTTAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTATAATCTGC 30309727 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || || || ||||||||||||||| | ||||| | |||||||| ||||| Sbjct 30309726 AAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCCGGAGG 30309667 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| || || ||| | | || | ||||| | | |||||| Sbjct 30309666 GATACCCTCTTTGTCCTGGATCTTAGCTTTGACATTATCAATAGTGTCAGACGATTCTAC 30309607 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| ||||| ||||| |||||||| ||||| Sbjct 30309606 CTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30309559 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| || ||||||||| | |||| || |||||||| ||||| Sbjct 30314266 GTGGATTCTTTTTGGATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCC 30314207 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || | ||||| || || || || || || ||||| ||| || ||| Sbjct 30314206 GCAAAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGCTTTC 30314147 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | |||||| || | || | |||||||| ||||| ||| Sbjct 30314146 ACGTTATCAATGGTGTCAGACGATTCTACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTT 30314087 Query 143168 TTTACGAATATTTGCAT 143184 || |||||||| ||||| Sbjct 30314086 TTCACGAATATCTGCAT 30314070 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || || ||||||||||||||| | ||||| | |||||||| ||||| || || |||||| Sbjct 30274283 TCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCTGGAGGGATACCCTCTTTG 30274224 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||| | | || | ||||| | | |||||| || | || | Sbjct 30274223 TCTTGGATCTTAGCTTTGACATTATCAATGGTGTCAGACGATTCTACCTCGAGGGTTATG 30274164 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| ||||| ||||| |||||||| ||||| Sbjct 30274163 GTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30274129 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| || ||||||||| | |||| || |||||||| |||||| Sbjct 30378148 GTGGATTCCTTTTGGATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCA 30378089 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || | ||||| | |||||||| ||||| || ||||||||||| || || || Sbjct 30378088 GCGAAAATCAGCCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTGGATCTTAGCCTTG 30378029 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || ||| || || | || | || ||||| ||||| ||| Sbjct 30378028 ACATTATCAATGGTGTCAGAGGATTCCACCTCGAGGGTGATAGTTTTGCCTGTCAAAGTT 30377969 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 30377968 TTCACAAAGATCTGCAT 30377952 >seq7 Length=51758522 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||||| |||| || ||||| ||||| |||||||| ||| Sbjct 4236753 GCCACCACGGAGACGGAGAACTAGGTGAAGGGTTGATTCCTTTTGAATGTTGTAGTCGGC 4236694 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| | || || || || || ||||| |||| ||||||||||| || || || Sbjct 4236693 GAGGGTGCGCCCATCCTCCAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCTGGGGG 4236634 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || || | | || | ||||| | | || || Sbjct 4236633 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCGGAGCTCTCGAC 4236574 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| ||||||| ||| || ||||| || ||||| Sbjct 4236573 CTCGAGAGTGATGGTCTTTCCGGTCAGTGTCTTAACGAAGATCTGCAT 4236526 >seq5 Length=40819286 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| || |||| || ||||| ||||||||||| ||||| | ||||| || Sbjct 8292520 CAAAACCAAGTGAAGGGTTGATTCCTTTTGTATGTTATAATCAGCAAGTGTGCGACCATC 8292579 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| ||||| ||||||||| | |||| | |||||||| ||||| || ||||| ||||| Sbjct 8292580 TTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAGGGATACCTTCCTTGTC 8292639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507009912922560