Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 156 6e-33 >seq1 Length=52205531 Score = 156 bits (172), Expect = 6e-33 Identities = 380/560 (68%), Gaps = 18/560 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||||||||||||| || ||| | ||||| || ||||||| || |||||||| || Sbjct 19483138 ATCTGGGAAATGTACAAGAAAGCTGAAGCCTCTTTCTGGACGGCGGAGGAGGTCGACCTC 19483079 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| | |||||||||||| | || || ||||| | || || | Sbjct 19483078 TCGCAGGACATCCGGCATTGGGAGACTC---TAACCGATGGCGAGCGCCATTTCATCACC 19483022 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | |||||||| |||| ||||||||| |||||| || || || | | | || Sbjct 19483021 CACGTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCCTTGAAAACCTTGCCGGC-CG 19482963 Query 125198 ATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAATCAT 125254 ||| | ||| | ||| || | |||| || || || ||||| || || ||| Sbjct 19482962 TTTCATGAAGGAGGT--CCAGGTCTCCGAGGCC-CGCGCCTTCTACGGCTTTCAGATCGC 19482906 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 || |||||| | ||||| || |||||| || |||| | ||||| || | Sbjct 19482905 CATCGAGAACATTCACTCCGAGATGTACAGCCTCCTCCTTGAAACCTACATAAAAGACTC 19482846 Query 125315 GCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 ||| | || || | ||||| |||| || ||||| | || | | || |||| Sbjct 19482845 -CAAAGAGAAGACCCGTCTCTTCCACGCCATTGACACTATTCCCTGCGTCACCAAGAAGG 19482787 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 || | |||| | || |||||||| || | |||| | |||||| | | || | Sbjct 19482786 CTAACTGGGCCCTACGCTGGATCGACTCCGCCGAGTCCTT---CGCCGAGCGCATCGTTG 19482730 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGCTC 125492 | |||||| ||| ||||| |||||||| || || || |||||| | ||||| |||||| Sbjct 19482729 CCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGAAGCTTTTGCT-CTATCTTCTGGCTC 19482671 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||| || |||||||| ||||| || | ||||| | || || || |||||| Sbjct 19482670 AAGAAGCGAGGCCTCATGCCGGGACTTACCTTCTCCAACGAACTCATCTCCCGCGACGAG 19482611 Query 125553 GGCCTACACTGTGACTTTGC 125572 || || ||||| ||||| || Sbjct 19482610 GGGCTCCACTGCGACTTCGC 19482591 Score = 123 bits (136), Expect = 4e-23 Identities = 373/562 (66%), Gaps = 22/562 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||||||||||||| || || | ||||| || ||||| | ||||||||| || || Sbjct 45626450 ATATGGGAAATGTACAAGAAAGCCGAAGCCTCTTTCTGGACCGCCGAAGAGGTTGACCTT 45626509 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||| | ||||| | | ||||| | | | || || ||||| | || || | Sbjct 45626510 TCCCAAGACCTCCGCCACTGGGACTCCC---TCACCGACGGCGAGCGCCACTTCATCACC 45626566 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | ||||||||||||| |||||| || ||||| ||| || || | || Sbjct 45626567 CACGTCCTCGCCTTCTTTGCCGCCTCCGACGGTATCGTTCTCGAAAACCTCGCCGCCCGC 45626626 Query 125199 TTCTCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGA 125256 ||| | || | | | || | |||| |||||||| ||||| ||||| ||| | Sbjct 45626627 TTCATGAAGGAAATC-CAAGTCTCCGAGGCC-CGTGCTTTCTACGGCTTCCAGATCGCCA 45626684 Query 125257 TTGAGAACGTGCACTCGGAAATGTACT--CTACACTGATTGACATGTACATTCGCGA-TC 125313 | |||||| | ||||| || |||||| || | || | || | ||||| || || Sbjct 45626685 TCGAGAACATCCACTCCGAGATGTACAGCCTCCTCT--TGGAAACCTACATCAAAGACTC 45626742 Query 125314 CGC--AACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 | | || || ||| || || | || | ||||| | || | | || || Sbjct 45626743 CACCGAAAAGAACCACCTGTTCCGTGCCGTA---GACACCATCCCCTGCGTCGCCAAGAA 45626799 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 ||| || |||| | || |||||||| | | | | |||| |||||| | | || Sbjct 45626800 GGCACAGTGGGCCTTGCGCTGGATCGACGCCACCGACTCTTT---CGCCGAGCGCATCGT 45626856 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGC 125490 || |||||| ||| ||||| |||||||| || || || || ||| | || || |||| Sbjct 45626857 CGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCTGGCAGCTTCTGCT-CGATATTCTGGC 45626915 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 ||||||||||||| | |||||||| || || | ||||| | ||||| ||||| | Sbjct 45626916 TCAAGAAGCGCGGTTTGATGCCCGGTCTCACCTTCTCCAACGAACTCATATCGCGAGATG 45626975 Query 125551 AGGGCCTACACTGTGACTTTGC 125572 | || || ||||| ||||| || Sbjct 45626976 AAGGGCTTCACTGCGACTTCGC 45626997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741052641626080