Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3 116 3e-21 seq7 82.4 6e-11 seq2 82.4 6e-11 >seq3 Length=52284309 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || || || |||||||| ||||| || || || ||||| ||||| || | | | | Sbjct 30378850 CTCAACACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAATCAGCAAGGGTACGCCCA 30378791 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | || || ||||| | || | | ||| ||||| |||||| || |||||| Sbjct 30378790 TCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGAATCCCCTCTTTG 30378731 Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || || ||||| ||||||| | || ||||||||| | |||| || || || ||||| Sbjct 30378730 TCCTGTATCTTTGC-CTTTACATTATCAATGGTATCGGAACTTTCAACCTCCAAAGTAAT 30378672 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || |||| || || |||||||||||||| Sbjct 30378671 GGTTTTTCCCGTCAAGGTCTTGACAAAAATTTGCAT 30378636 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | | || |||||||| || | ||||| || || || || || ||||| Sbjct 30378636 TGCCACCACGAAGCCTCAAAACTAAGTGCAAAGTGGACTCCTTCTGAATATTATAATCCG 30378577 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || |||| | ||||| | ||||| ||||| | || | | || ||||| | Sbjct 30378576 CCAGGGTTCTTCCATCTTCAAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGGG 30378517 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| || || ||||| ||| ||| || ||| | || |||||||| | | || | Sbjct 30378516 GAATACCCTCCTTGTCCTGAATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCCA 30378457 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || |||||||||||||| || |||| ||| || ||||| |||||||| Sbjct 30378456 CCTCCAAGGTAATGGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 30378408 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATTG 15219 || |||||||| || || || || ||||| || || || | | | ||||| ||||| Sbjct 30284886 TGGAGGGTGGATTCCTTCTGAATATTGTAGTCTGCCAAGG-TGCGACCATCTTCCAATTG 30284828 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 ||| ||||| | || | | || || || ||| || ||||||||||| ||| || Sbjct 30284827 TTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTT 30284768 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 |||| || ||| | || || ||||| | || || || |||||||||||||| |||| Sbjct 30284767 TGCT-TTCACATTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTTTTCCCTG 30284709 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| || ||||| || ||||| Sbjct 30284708 TCAGAGTCTTCACAAATATCTGCAT 30284684 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATTG 15219 || |||||||| ||||| || |||||||| || || || | | | ||||| ||||| Sbjct 30310445 TGGAGGGTGGATTCTTTCTGAATGTTGTAGTCTGCCAAGG-TGCGACCATCTTCCAATTG 30310387 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 ||| ||||| | || | | || || || |||||| || || ||||| ||| || Sbjct 30310386 TTTACCAGCAAAAATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTT 30310327 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 |||| || ||| | || || ||||| | || || || ||||||||||| || |||| Sbjct 30310326 TGCT-TTCACATTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCTG 30310268 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| || ||||| || ||||| Sbjct 30310267 TCAGAGTCTTCACAAATATCTGCAT 30310243 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | | || ||||| || || || ||||| || || || ||||| ||||| Sbjct 30274813 TGCCACCCCGAAGCCTCAAAACCAAGTGCAGAGTGGATTCCTTCTGGATGTTATAATCCG 30274754 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || |||| ||||||| | ||||| ||||| | || | | || || || | Sbjct 30274753 CAAGGGTTCTACCGTCTTCAAGCTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAG 30274694 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || || ||||| ||| ||| ||| ||| | || |||||||| | | || | Sbjct 30274693 GGATGCCCTCCTTGTCTTGAATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCA 30274634 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || ||||| ||||| || || || | ||| || |||||||||||||| Sbjct 30274633 CCTCCAAGGTTATGGTCTTTCCAGTTAAAGTCTTCACAAAAATTTGCAT 30274585 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| || || || ||||| ||||| || | | | | ||||| | || Sbjct 30284658 TGCAGAGTGGATTCCTTCTGGATGTTATAATCAGCAAGGGTACGCCCATCTTCCAGCTGC 30284599 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| | || | | ||||| || ||| || ||||| ||||| ||| ||| Sbjct 30284598 TTCCCAGCAAAGATAAGCCTCTGTTGATCTGGTGGTATGCCTTCCTTGTCCTGAATCTTT 30284539 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || ||||| || | |||| || || || |||||||| || ||||| Sbjct 30284538 GC-CTTCACATTATCGATGGTGTCAGAACTTTCAACCTCCAAAGTAATGGTCTTTCCTGT 30284480 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||||||||||||||| Sbjct 30284479 CAACGTCTTTACAAAAATTTGCAT 30284456 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATTG 15219 || |||||||| || || || |||||||| || || || | | | ||||| ||||| Sbjct 30275242 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAGG-TGCGACCATCTTCCAATTG 30275184 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 ||| ||||| | || | | || || || |||||| || || ||||| ||| || Sbjct 30275183 TTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATCTT 30275124 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 |||| || ||| | || || ||||| | || || || ||||||||||| || |||| Sbjct 30275123 TGCT-TTCACATTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCTG 30275065 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| || ||||| || ||||| Sbjct 30275064 TCAGAGTCTTCACAAATATCTGCAT 30275040 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATTG 15219 || |||||||| || || || |||||||| || || || | | | ||||| ||||| Sbjct 30315184 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAGG-TGCGACCATCTTCCAATTG 30315126 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 ||| ||||| | || | | || || || ||| || || || ||||| ||| || Sbjct 30315125 TTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGAATCTT 30315066 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 |||| || ||| | || || ||||| | || || || |||||||||||||| |||| Sbjct 30315065 TGCT-TTCACATTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTTTTCCCTG 30315007 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| || ||||| || ||||| Sbjct 30315006 TCAGAGTCTTCACAAATATCTGCAT 30314982 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| ||||| || || || || || ||||| || | | | | ||| Sbjct 30379075 AACACCAAGTGAAGAGTGGATTCCTTCTGGATATTATAATCAGCAAGGGTACGCCCATCT 30379016 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || || || || | || | | ||||| || ||| || ||||| ||||| Sbjct 30379015 TCCAGCTGCTTTCCGGCAAAGATAAGCCTCTGTTGATCTGGTGGTATGCCTTCCTTGTCC 30378956 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| |||||| || ||| | || || ||||| |||| || || ||||||||||| Sbjct 30378955 TGAATCTTTGCT-TTCACATTGTCAATTGTATCAGAGCTTTCCACCTCCAAGGTAATGGT 30378897 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| || ||||| |||||||| Sbjct 30378896 CTTTCCTGTCAGAGTCTTCACAAATATTTGCAT 30378864 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || ||||| || || || || || ||||| || || || ||||| || |||| | Sbjct 30284442 CTCAAAACCAAGTGCAGAGTAGATTCTTTCTGGATATTATAATCCGCAAGGGTTCTTCCA 30284383 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | ||||| || || | || | | || ||||| ||||| || || || Sbjct 30284382 TCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTA 30284323 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||| ||| || ||| | || ||||| || | | || || || ||||||||| Sbjct 30284322 TCCTGAATCTTGGCTTTCACATTATCAATGGTGTCTGAACTCTCCACCTCCAAGGTAATG 30284263 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || |||| ||| || ||||| |||||||| Sbjct 30284262 GTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 30284228 >seq7 Length=51758522 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| || || || ||||||||||| || |||| | || || || || Sbjct 4237640 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTTCCATCCTCCAACTGC 4237581 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | ||||| | || ||||| ||| || || || ||||| |||||| Sbjct 4237580 TTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATTTTC 4237521 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || | || || || | ||||||||| ||||| || Sbjct 4237520 GCCTTCACATTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTAATGGTCTTACCCGTA 4237461 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| Sbjct 4237460 AGGGTCTTGACGAAAATCTGCAT 4237438 >seq2 Length=49040938 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || || ||||| || || | ||| | || || || || Sbjct 4562088 TGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTCCTCCCATCCTCCAACTGC 4562029 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||| | || ||||| |||||||| || ||||| ||||||| Sbjct 4562028 TTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATTTTG 4561969 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || | | || || || | || ||||| || || ||| Sbjct 4561968 GCCTTGACATTGTCAATGGTGTCAGAACTCTCAACCTCCAGAGTGATGGTCTTCCCAGTC 4561909 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || |||||||| ||||| Sbjct 4561908 AAGGTCTTGACAAAAATCTGCAT 4561886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362176074846228