Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3 125 6e-24 >seq3 Length=52284309 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| || || | |||||| || |||||||| |||||||| ||||||||| Sbjct 30378634 CCACCACGAAGCCTCAAAACTAAGTGCAAAGTGGACTCCTTCTGAATATTATAATCCGCC 30378575 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || |||||||| || ||| | ||||| |||||||| || ||| Sbjct 30378574 AGGGTTCTTCCATCTTCAAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGA 30378515 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||| || ||| || | | | ||||| | |||| Sbjct 30378514 ATACCCTCCTTGTCCTGAATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCCACC 30378455 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||||||||| || || ||||| |||||||| |||||||| Sbjct 30378454 TCCAAGGTAATGGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 30378408 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| || |||| ||||| || || ||||| || || || |||||||| Sbjct 30274811 CCACCCCGAAGCCTCAAAACCAAGTGCAGAGTGGATTCCTTCTGGATGTTATAATCCGCA 30274752 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| || ||||||||||| ||| ||||||| |||||||||||| || Sbjct 30274751 AGGGTTCTACCGTCTTCAAGCTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGG 30274692 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| ||| || || || | | | ||||| | |||| Sbjct 30274691 ATGCCCTCCTTGTCTTGAATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACC 30274632 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || |||||||| || |||||||||||||| Sbjct 30274631 TCCAAGGTTATGGTCTTTCCAGTTAAAGTCTTCACAAAAATTTGCAT 30274585 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| || |||| ||||| || || ||||| || || || |||||||| Sbjct 30310013 CCACCACGAAGCCTCAAAACCAAGTGCAGAGTGGATTCCTTCTGGATGTTATAATCCGCA 30309954 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| || ||||||||||| ||| ||||||| |||||||||||| || Sbjct 30309953 AGGGTTCTACCGTCTTCAAGCTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGG 30309894 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || || ||| || | | | ||||| | |||| Sbjct 30309893 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCCACC 30309834 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || |||||||| || |||||||| ||||| Sbjct 30309833 TCCAAGGTTATGGTCTTTCCAGTTAAAGTCTTCACAAAAATCTGCAT 30309787 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || || | ||| || |||| ||||| ||||| || || || ||||| ||||||| Sbjct 30284456 TTCCACCACGAAGCCTCAAAACCAAGTGCAGAGTAGATTCTTTCTGGATATTATAATCCG 30284397 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | | || || |||||||| || ||| | ||||| |||||||| || || Sbjct 30284396 CAAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGG 30284337 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| || || ||| || ||| || | | | || || | |||| Sbjct 30284336 GAATACCCTCCTTATCCTGAATCTTGGCTTTCACATTATCAATGGTGTCTGAACTCTCCA 30284277 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||||||||| || || ||||| |||||||| |||||||| Sbjct 30284276 CCTCCAAGGTAATGGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 30284228 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 18826 CCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGC 18885 ||| || |||| ||||| || || ||| | |||||||| ||||| || | ||| | | Sbjct 30274572 CCTCAAAACCAAGTGCAGGGTGGATTCCATCTGAATATTATAATCGGCAAGGGTTCTTCC 30274513 Query 18886 GTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTT 18945 ||||| ||||||||||| ||| | || || |||||||||||| || | |||||| || Sbjct 30274512 ATCCTCAAGCTGTTTACCAGCAAATATCAGCCTCTGCTGATCCGGAGGGATGCCCTCCTT 30274453 Query 18946 GTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAAT 19005 ||| || || ||||| | | | ||||| | |||| || | ||| || Sbjct 30274452 GTCTTGGATCTTGGCCTTTACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTTAT 30274393 Query 19006 GGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || || ||||| || |||||||| ||||| Sbjct 30274392 GGTCTTTCCAGTCAAAGTCTTCACAAAAATCTGCAT 30274357 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| |||||||| ||||| || | ||| | | ||||| Sbjct 30309768 CACCAAGTGGAGGGTGGACTCCTTCTGAATATTATAATCTGCAAGGGTTCTTCCATCCTC 30309709 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || |||||||| ||| |||| || |||||||||||| || | ||||||||||| Sbjct 30309708 AAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCCGGAGGGATACCCTCTTTGTCCTG 30309649 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || ||| || | | | ||| || | || |||| ||| ||||| || Sbjct 30309648 GATCTTAGCTTTGACATTATCAATAGTGTCAGACGATTCTACCTCGAGGGTTATGGTCTT 30309589 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||||||| || || || ||||| Sbjct 30309588 GCCAGTCAAAGTTTTCACGAATATCTGCAT 30309559 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || ||||||||||||||||||||||| || | ||| | ||||||| Sbjct 30284209 CACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTAATCAGCAAGGGTTCTTCCGTCCTC 30284150 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || || || || || |||| || |||||||| || || | |||||||||||| Sbjct 30284149 AAGTTGCTTCCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGGATGCCCTCTTTGTCTTG 30284090 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | | || || | ||| || | ||||||||| || Sbjct 30284089 GATCTTGGCCTTGACATTATCAATGGTGTCTGAACTCTCGACCTCAAGGGTAATGGTCTT 30284030 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || |||||||| |||||||| Sbjct 30284029 CCCAGTCAAGGTCTTGACAAAGATTTGCAT 30284000 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || ||||||||||||||||||||||| || | ||| | ||||||| Sbjct 30378389 CACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTAATCAGCAAGGGTTCTTCCGTCCTC 30378330 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || || || || || |||| || |||||||| || || | |||||||||||| Sbjct 30378329 AAGTTGCTTCCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGGATGCCCTCTTTGTCTTG 30378270 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | | || || | ||| || | ||||||||| || Sbjct 30378269 GATCTTGGCCTTGACATTATCAATGGTGTCTGAACTCTCGACCTCAAGGGTAATGGTCTT 30378210 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || |||||||| |||||||| Sbjct 30378209 CCCAGTCAAGGTCTTGACAAAGATTTGCAT 30378180 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | ||||| ||| | || |||||||| |||||||| ||||| || Sbjct 30274355 CCACCTCTCAAACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGAATATTATAATCGGCA 30274296 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||| || |||||||| ||| |||| || ||||||||||| || Sbjct 30274295 AGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCTGGAGGG 30274236 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| || || ||| || | | | || || | || Sbjct 30274235 ATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATGGTGTCAGACGATTCTACC 30274176 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| ||||| || || || |||||||| || || || ||||| Sbjct 30274175 TCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30274129 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||| ||||||||||| || |||| || | || |||| ||||| || Sbjct 30284880 GTGGATTCCTTCTGAATATTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGTTTCCCA 30284821 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| ||||||| ||||||||||| || | ||| |||||||| ||| || ||| Sbjct 30284820 GCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTTGCTTTC 30284761 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| |||| || | |||||||||||| ||||| | ||| Sbjct 30284760 ACATTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTTTTCCCTGTCAGAGTC 30284701 Query 19025 TTGACAAAAATTTGCATT 19042 || ||||| || |||||| Sbjct 30284700 TTCACAAATATCTGCATT 30284683 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| ||||| ||||| ||||||||||| || |||| || | ||||||| || Sbjct 30379295 GTGCAGGGTAGATTCCTTCTGAATATTGTAGTCTGCCAAGGTACGACCATCCTCCAATTG 30379236 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| ||||||| ||||||||||| || | |||||| ||||| ||| || Sbjct 30379235 CTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGAATCTT 30379176 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || | | | ||||| |||| || | |||||||| || ||||| Sbjct 30379175 GGCTTTCACATTATCAATTGTATCAGAGCTCTCCACCTCCAATGTAATGGTCTTCCCTGT 30379116 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 | || || ||||| |||||||| Sbjct 30379115 CAGGGTCTTCACAAATATTTGCAT 30379092 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||| ||||| ||||| || |||| || | || |||| ||||| || Sbjct 30315178 GTGGATTCCTTCTGAATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGTTTCCCA 30315119 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| ||||||| ||||||||||| || | |||||| ||||| ||| || ||| Sbjct 30315118 GCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGAATCTTTGCTTTC 30315059 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| |||| || | |||||||||||| ||||| | ||| Sbjct 30315058 ACATTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTTTTCCCTGTCAGAGTC 30314999 Query 19025 TTGACAAAAATTTGCATT 19042 || ||||| || |||||| Sbjct 30314998 TTCACAAATATCTGCATT 30314981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414569222754952