Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 7e-16 >seq3 Length=52284309 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| || | | |||||| || || ||| ||| || |||||||||||||| | Sbjct 30309785 CCACCTCTTAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTATAATC-TGC 30309727 Query 43955 AATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | |||| || | |||||| || ||||| |||| || ||||| ||| |||| Sbjct 30309726 AAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCCGGAGG 30309667 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| ||||| || || || |||||| || ||| ||| || | || || || Sbjct 30309666 GATACCCTCTTTGTCCTGGATCTTAGCTTTGACATTATCAATAGTGTCAGACGATTCTAC 30309607 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || || || || || ||||| ||||| ||||| ||||| Sbjct 30309606 CTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30309559 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||| | | ||||| || || ||| ||| || ||||||||||||||| Sbjct 30274356 ACCACCTCTCAAACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGAATATTATAATCGGC 30274297 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | |||| || | |||||| || ||||| |||| || ||||| || |||| Sbjct 30274296 AAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCTGGAGG 30274237 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| ||||| ||| || || |||||| || ||| || || | || || || Sbjct 30274236 GATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATGGTGTCAGACGATTCTAC 30274177 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || || || || || ||||| ||||| ||||| ||||| Sbjct 30274176 CTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30274129 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||||||||| || ||||| || | || ||||| || | || | ||||||| Sbjct 30284840 CATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCTTCTT 30284781 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | || ||| ||| ||| || || ||| ||||| | |||||| || | |||| Sbjct 30284780 TGTCCTGAATCTTTGCTTTCACATTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAA 30284721 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| || || | ||||||||||||||| ||||| Sbjct 30284720 TGGTTTTCCCTGTCAGAGTCTTCACAAATATCTGCAT 30284684 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || || ||| || || || ||||||||||| | |||| |||| Sbjct 30379075 AACACCAAGTGAAGAGTGGATTCCTTCTGGATATTATAATCAGCAAGGGTACGCCCATCT 30379016 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| || ||||| ||||| || | || || || || | |||| ||||| || || Sbjct 30379015 TCCAGCTGCTTTCCGGCAAAGATAAGCCTCTGTTGATCTGGTGGTATGCCTTCCTTGTCC 30378956 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| ||| ||| || | ||| ||||| | ||||| || | ||||| || Sbjct 30378955 TGAATCTTTGCTTTCACATTGTCAATTGTATCAGAGCTTTCCACCTCCAAGGTAATGGTC 30378896 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || | ||||||||||||||||||||| Sbjct 30378895 TTTCCTGTCAGAGTCTTCACAAATATTTGCAT 30378864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966 || || ||||| || || || ||||| || ||||||||||| | | || Sbjct 30284442 CTCAAAACCAAGTGCAGAGTAGATTCTTTCTGGATATTATAATCCGCAAGGGTTCTTCCA 30284383 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || | ||||| || ||||| || | || |||||||| | || | ||| || ||| Sbjct 30284382 TCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTA 30284323 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 || ||| || ||| || || ||| || |||| |||||| || | ||||| Sbjct 30284322 TCCTGAATCTTGGCTTTCACATTATCAATGGTGTCTGAACTCTCCACCTCCAAGGTAATG 30284263 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| ||||| |||||||| ||||| ||||||||| Sbjct 30284262 GTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCATG 30284227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966 || || || || || | ||| ||| || |||||||||||||| | | || Sbjct 30378622 CTCAAAACTAAGTGCAAAGTGGACTCCTTCTGAATATTATAATCCGCCAGGGTTCTTCCA 30378563 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || | ||||| || ||||| || | || |||||||| | || | ||| || || Sbjct 30378562 TCTTCAAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTG 30378503 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 || ||| || ||| || || ||| ||||||| |||||| || | ||||| Sbjct 30378502 TCCTGAATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTAATG 30378443 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| ||||| |||||||| ||||| ||||||||| Sbjct 30378442 GTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCATG 30378407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354774538712784