Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq5 82.4 6e-11 >seq3 Length=52284309 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | |||||| ||||| || || ||||||||||| || || || ||||| Sbjct 30284456 TTCCACCACGAAGCCTCAAAACCAAGTGCAGAGTAGATTCTTTCTGGATATTATAATCCG 30284397 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | ||| | |||||| | ||||| || ||| | ||||||||||| || || || Sbjct 30284396 CAAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGG 30284337 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || || || || ||| || |||||| | ||| | || | ||| Sbjct 30284336 GAATACCCTCCTTATCCTGAATCTTGGCTTTCACATTATCAATGGTGTCTGAACTCTCCA 30284277 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| |||||||||||| |||||||| || |||||||| |||||||| Sbjct 30284276 CCTCCAAGGTAATGGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 30284228 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| || || || ||||| || ||| || | ||||||||||||| Sbjct 30284886 TGGAGGGTGGATTCCTTCTGAATATTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGT 30284827 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| ||||||||||||| ||||| || | |||||||||||| ||| ||| Sbjct 30284826 TTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTT 30284767 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 |||||| | ||| | ||| || | ||| |||| |||||||||||| || || Sbjct 30284766 GCTTTCACATTATCAATTGTATC-AGAGCTCTCCACCTCCAAGGTAATGGTTTTCCCTGT 30284708 Query 20185 CAACGTTTTGACAAAAATTTGCATT 20209 || || || ||||| || |||||| Sbjct 30284707 CAGAGTCTTCACAAATATCTGCATT 30284683 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || |||||||| || |||||||| || ||| || | ||||||||||||| Sbjct 30310445 TGGAGGGTGGATTCTTTCTGAATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGT 30310386 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| ||||||||||||| ||||| || | ||| || ||||| ||| ||| Sbjct 30310385 TTACCAGCAAAAATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTT 30310326 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 |||||| | ||| | ||| || | ||| |||| ||||||||| || || || Sbjct 30310325 GCTTTCACATTATCAATTGTATC-AGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCTGT 30310267 Query 20185 CAACGTTTTGACAAAAATTTGCATT 20209 || || || ||||| || |||||| Sbjct 30310266 CAGAGTCTTCACAAATATCTGCATT 30310242 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| || || |||||||| || ||| || | ||||||||||||| Sbjct 30315184 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGT 30315125 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| ||||||||||||| ||||| || | ||| || ||||| ||| ||| Sbjct 30315124 TTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGAATCTTT 30315065 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 |||||| | ||| | ||| || | ||| |||| |||||||||||| || || Sbjct 30315064 GCTTTCACATTATCAATTGTATC-AGAGCTCTCCACCTCCAAGGTAATGGTTTTCCCTGT 30315006 Query 20185 CAACGTTTTGACAAAAATTTGCATT 20209 || || || ||||| || |||||| Sbjct 30315005 CAGAGTCTTCACAAATATCTGCATT 30314981 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | ||||||||||||||| || || ||||| || || ||||| ||||| Sbjct 30378864 TTCCACCACGAAGCCTCAACACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAATCAG 30378805 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | || |||||||| || || || ||| | |||||||| || || || | Sbjct 30378804 CAAGGGTACGCCCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGTG 30378745 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| || ||| || || | ||| | |||| | ||| Sbjct 30378744 GAATCCCCTCTTTGTCCTGTATCTTTGCCTTTACATTATCAATGGTATCGGAACTTTCAA 30378685 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||||||||| || ||||| || ||||||||||||||||| Sbjct 30378684 CCTCCAAAGTAATGGTTTTTCCCGTCAAGGTCTTGACAAAAATTTGCAT 30378636 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||||||||| || || || ||||| || || || || ||||| | | || ||| Sbjct 30379076 CAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTATAATCAGCAAGGGTACGCCCATC 30379017 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || || || ||| | ||||||||||||||||| || | |||||| ||||| Sbjct 30379016 TTCCAGCTGCTTTCCGGCAAAGATAAGCCTCTGTTGATCTGGTGGTATGCCTTCCTTGTC 30378957 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||| ||| |||||| | | ||| | ||| |||| |||| ||||||||| Sbjct 30378956 CTGAATCTTTGCTTTCACATTGTCAATTGTATCAGAGCTTTCCACCTCCAAGGTAATGGT 30378897 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || |||| || || ||||| ||||||||| Sbjct 30378896 CTTTCCTGTCAGAGTCTTCACAAATATTTGCATT 30378863 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| || || |||||||| || ||| || | ||||||||||||| Sbjct 30275242 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGT 30275183 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| ||||||||||||| ||||| || | ||| || ||||| ||| ||| Sbjct 30275182 TTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATCTTT 30275123 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 |||||| | ||| | ||| || | ||| |||| ||||||||| || || || Sbjct 30275122 GCTTTCACATTATCAATTGTATC-AGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCTGT 30275064 Query 20185 CAACGTTTTGACAAAAATTTGCATT 20209 || || || ||||| || |||||| Sbjct 30275063 CAGAGTCTTCACAAATATCTGCATT 30275039 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | |||||| || || || | || || || || || || || ||||| || Sbjct 30378634 CCACCACGAAGCCTCAAAACTAAGTGCAAAGTGGACTCCTTCTGAATATTATAATCCGCC 30378575 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| | ||||| || ||| | ||||||||||| || || ||| Sbjct 30378574 AGGGTTCTTCCATCTTCAAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGA 30378515 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || || ||||| ||| || |||||| | ||| | ||| | ||| Sbjct 30378514 ATACCCTCCTTGTCCTGAATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCCACC 30378455 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| |||||||||||| |||||||| || |||||||| |||||||| Sbjct 30378454 TCCAAGGTAATGGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 30378408 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | |||||| ||||| || || || ||||| || || ||||| ||||| | Sbjct 30274811 CCACCCCGAAGCCTCAAAACCAAGTGCAGAGTGGATTCCTTCTGGATGTTATAATCCGCA 30274752 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || ||||| | ||||| || ||| ||||||||||||| ||||| || Sbjct 30274751 AGGGTTCTACCGTCTTCAAGCTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGG 30274692 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||| || ||||| ||| || || || | ||| | ||| | ||| Sbjct 30274691 ATGCCCTCCTTGTCTTGAATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACC 30274632 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || || || || || |||||||||||||| Sbjct 30274631 TCCAAGGTTATGGTCTTTCCAGTTAAAGTCTTCACAAAAATTTGCAT 30274585 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | |||||| ||||| || || || ||||| || || ||||| ||||| | Sbjct 30310013 CCACCACGAAGCCTCAAAACCAAGTGCAGAGTGGATTCCTTCTGGATGTTATAATCCGCA 30309954 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || ||||| | ||||| || ||| ||||||||||||| ||||| || Sbjct 30309953 AGGGTTCTACCGTCTTCAAGCTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGG 30309894 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||| || ||||| || || |||||| | ||| | ||| | ||| Sbjct 30309893 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCCACC 30309834 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || || || || || |||||||| ||||| Sbjct 30309833 TCCAAGGTTATGGTCTTTCCAGTTAAAGTCTTCACAAAAATCTGCAT 30309787 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || |||||||| || || || ||||| || ||| || | ||| |||||||| Sbjct 30379294 TGCAGGGTAGATTCCTTCTGAATATTGTAGTCTGCCAAGGTACGACCATCCTCCAATTGC 30379235 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| ||||||||||||| ||||| || | ||| || ||||| ||| || Sbjct 30379234 TTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGAATCTTG 30379175 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 |||||| | ||| | ||| || | ||| |||| |||||||| || || || Sbjct 30379174 GCTTTCACATTATCAATTGTATC-AGAGCTCTCCACCTCCAATGTAATGGTCTTCCCTGT 30379116 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 || || || ||||| |||||||| Sbjct 30379115 CAGGGTCTTCACAAATATTTGCAT 30379092 >seq5 Length=40819286 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||| | | |||||| ||||| || || || ||||| |||||||| Sbjct 8292493 TTTAATCATGGTTCCTCCCCTGAGCCTCAAAACCAAGTGAAGGGTTGATTCCTTTTGTAT 8292552 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||| ||||| | | || | |||||||| ||| || || ||| |||| | |||||| Sbjct 8292553 GTTATAATCAGCAAGTGTGCGACCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTG 8292612 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | ||||| ||||| Sbjct 8292613 CTGATCAGGAGGGATACCTTCCTTGTC 8292639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419583579486948