Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 109 5e-19 seq3 93.3 4e-14 seq7 87.8 2e-12 >seq2 Length=49040938 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || ||||||| |||||| Sbjct 7435701 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 7435642 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||||| ||| | | ||||||||| || || Sbjct 7435641 TTTCCGGCGAATATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 7435582 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | ||||||| ||| | || |||||||| || || Sbjct 7435581 GCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTTTTCCCCGTA 7435522 Query 48704 AGAGTTTTCACAAAAATCTGCATCG 48728 || |||||||| || |||||||||| Sbjct 7435521 AGGGTTTTCACGAATATCTGCATCG 7435497 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || |||||||| ||||||| || | ||||||||||| Sbjct 4561633 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCCTCCAGCTG 4561574 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||| ||| || | | |||||||||| |||||| Sbjct 4561573 CTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGAATTTT 4561514 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||| | | | || ||||| |||| | |||| ||| | |||||||| ||||| Sbjct 4561513 GGCCTTCACGTTGTCG--ATGGTGTCGGAACTCTCCACCTCAAGAGTTATGGTCTTACCA 4561456 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATC 48727 || | || || || || || |||||| Sbjct 4561455 GTCAAGGTCTTAACGAAGATTTGCATC 4561429 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || ||||||| |||||| Sbjct 7451111 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGC 7451052 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||||| || | | ||||||||| || || Sbjct 7451051 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTG 7450992 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | ||||||| ||| | || || || || || ||| Sbjct 7450991 GCCTTGACATTGTCGATGGTGTCTGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTG 7450932 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || |||||||| Sbjct 7450931 AGGGTTTTCACGAATATCTGCAT 7450909 >seq3 Length=52284309 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||| || |||||||| || | | || || | ||||| || |||||||| || | Sbjct 30378142 TCCTTTTGGATATTGTAATCGGCAAGAGTG-CGACCATCCTCGAGTTGCTTACCAGCGAA 30378084 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | | |||||||||| || | || ||| |||||| || || ||||| | Sbjct 30378083 AATCAGCCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTGGATCTTAGCCTTGACATT 30378024 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | || ||| ||||| || || ||||| || || | ||||||||| Sbjct 30378023 ATCAATGGTGTCAGAGGATTCCACCTCGAGGGTGATAGTTTTGCCTGTCAAAGTTTTCAC 30377964 Query 48715 AAAAATCTGCATC 48727 ||| ||||||||| Sbjct 30377963 AAAGATCTGCATC 30377951 >seq7 Length=51758522 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| ||||||||||||||||| | || | ||||||| |||| Sbjct 4237640 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTTCCATCCTCCAACTGC 4237581 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || || | |||||| ||| || | | ||||||||| ||||||| Sbjct 4237580 TTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATTTTC 4237521 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | |||| ||| | || ||||| ||||| || Sbjct 4237520 GCCTTCACATTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTAATGGTCTTACCCGTA 4237461 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||||||||| Sbjct 4237460 AGGGTCTTGACGAAAATCTGCAT 4237438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421247565128708