Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5 120 2e-22 seq4 113 2e-20 seq206 111 8e-20 seq3 111 8e-20 seq184 107 1e-18 seq2 107 1e-18 seq6 105 3e-18 seq11 102 4e-17 seq1 102 4e-17 seq7 100 1e-16 seq8 98.7 5e-16 >seq5 Length=40819286 Score = 120 bits (132), Expect = 2e-22 Identities = 80/89 (90%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| | |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 39042322 AATAAAAAATTA--TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 39042379 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 39042380 GACGCTCTAACCAACTGAGCTAATGGGCC 39042408 >seq4 Length=45960019 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 4707396 AAAAACAAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 4707455 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 4707456 GCTCTAACCAACTGAGCTAATGGGCC 4707481 Score = 111 bits (122), Expect = 8e-20 Identities = 84/98 (86%), Gaps = 5/98 (5%) Strand=Plus/Plus Query 11437 AATTAATAAAAA---ATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 || ||| ||||| |||||||| |||||||| | | |||||||| |||||||||||| Sbjct 4719590 AAATAAAAAAAAGTTATCAAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGT 4719649 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| ||||||||||||||| |||| Sbjct 4719650 TATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 4719687 Score = 107 bits (118), Expect = 1e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 4708410 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 4708469 Query 11512 CAACTGAGCTAATGGGCCGTC 11532 || |||||||||| |||| || Sbjct 4708470 CAGCTGAGCTAATAGGCCATC 4708490 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||| ||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 4708187 ATTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 4708246 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 4708247 ACTGAGCTAATAGGCC 4708262 >seq206 Length=5001 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2520 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2579 Query 11516 TGAGCTAATGGGCCGTCG 11533 ||||||||||||||| || Sbjct 2580 TGAGCTAATGGGCCGGCG 2597 >seq3 Length=52284309 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||||| |||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 49194842 AAAATCAT-TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 49194900 Query 11506 TCTRACCAACTGAGCTAATGGGCCGTC 11532 ||| |||||||||||||||| ||| || Sbjct 49194901 TCTAACCAACTGAGCTAATGAGCCATC 49194927 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 40127988 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 40128047 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 40128048 CAGCTGAGCTAATAGGCC 40128065 >seq184 Length=5550 Score = 107 bits (118), Expect = 1e-18 Identities = 92/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 11417 AAGAATCCAGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAAC 11476 || ||| ||||| |||| | | || |||| | |||| |||||||| | | |||||| Sbjct 1285 AAAAATTAAGGGATATATTTCACTTATTAAAAGTGAAAT-GGCCCATGCAGGTTTCGAAC 1343 Query 11477 CTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 1344 CTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 1396 >seq2 Length=49040938 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||||||| | | |||||||| ||||||| ||||||||||||| || Sbjct 40822696 AAAAAAACATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCAC 40822637 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 40822636 GCTCTAACCAACTGAGCTAATGGGCC 40822611 >seq6 Length=31977256 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 28385328 AATAAAAAA--ATTCTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 28385385 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 28385386 GACGCTCTAACCAACTGAGCTAATAGGCC 28385414 >seq11 Length=50367376 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 37029438 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 37029497 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 37029498 CAGCTGAGCTAATAGGCC 37029515 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 37152178 AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 37152237 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 37152238 CAGCTGAGCTAATAGGCC 37152255 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 37187044 AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 37187103 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 37187104 CAGCTGAGCTAATAGGCC 37187121 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 4231533 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 4231592 Query 11513 AACTGAGCTAATGGGCC 11529 | |||||||||| |||| Sbjct 4231593 AGCTGAGCTAATAGGCC 4231609 Score = 98.7 bits (108), Expect = 5e-16 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 37033748 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 37033807 Query 11512 CAACTGAGCTAAT 11524 ||||| ||||||| Sbjct 37033808 CAACTAAGCTAAT 37033820 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | || | |||||| | |||||||| |||||||||| ||||||| |||||| Sbjct 37007437 TGGCCCATGCA-GGTTTGAACCTGCTACCTTCGCATTATTAGCACTACGCTCTAACCAAC 37007495 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 37007496 TGAGCTAATAGGCC 37007509 >seq1 Length=52205531 Score = 102 bits (112), Expect = 4e-17 Identities = 75/87 (86%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | |||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 44466527 TAAAAAA--ATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 44466470 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 44466469 CGCTCTAACCAGCTGAGCTAATAGGCC 44466443 >seq7 Length=51758522 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 15564250 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 15564191 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 15564190 TGAGCTAATAGGCC 15564177 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | || ||||| ||||||| ||||||||||||||||||||| || Sbjct 35061066 AAAATGGCCCATGCAGGTCTCAAACCTGCGACCTTTGCGTTATTAGCACGACGCTCTAAC 35061125 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 35061126 CAACTGAGCTAATAGGCC 35061143 >seq8 Length=59662532 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| |||| |||||||||||||||||||||||| |||| Sbjct 48934371 ATTGGCCCATGCAGGTCTCGAACCTGCGACTTTCGCGTTATTAGCACGACGCTCTAACCA 48934430 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 48934431 GCTGAGCTAATAGGCC 48934446 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261488943657808