Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq9 192 2e-44 seq7 111 5e-20 seq8 89.7 1e-13 >seq9 Length=37469608 Score = 192 bits (212), Expect = 2e-44 Identities = 516/780 (66%), Gaps = 27/780 (3%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||| | | ||| | || || | ||| || | ||||| || | | |||||| || | Sbjct 1917714 TTTTATAACTGGATAACCAGCATCGAAAATCTTCTTTACATATGATTGTTTGGTGTTTTG 1917773 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||||||| | || | | ||| | ||||| |||| ||||||| || || Sbjct 1917774 ATGATTCCTATTGTGTTAACCACAACTTTTGTATTTATTATCGCTTTTATCGTTGCCCCT 1917833 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || || |||| ||||| || | ||||| |||| || || || | || ||||||||| Sbjct 1917834 CCAGTGGATAATGATGGTATTCACGAGCCTGTTTTTGGATCCCTACTTTATGGAAACAAT 1917893 Query 19470 ATTATTTCTGGAGC-AGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGAT 19528 || |||||||| || | || ||| | | || |||| |||| |||||||| || Sbjct 1917894 ATCATTTCTGGTGCGACTA-TTCATACTTTTGCGGCTATAGATTTGCATTTTTATCCTAT 1917952 Query 19529 CTGGGAAGCCGGCACTT-TAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTG 19587 ||||||| | | || | ||||| || ||||||||| |||||| ||| |||| ||| Sbjct 1917953 ATGGGAAG-TGACTTTTGTTGATGAATGCCTATACAACGACGGTCCTTATGAACTAATTG 1918011 Query 19588 TCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAAC-TATCTTAC 19646 | | || |||||| | | ||||| ||| ||| | | ||||||| || ||| | Sbjct 1918012 TTCTACATTTCTTACTTAGTGTAGCTTGCTACATGGGTCGTGAATGGGAACTTAACTTTC 1918071 Query 19647 AGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTT 19706 | || || ||| | ||||| || |||||| || | || |||| | | || Sbjct 1918072 -GTTTGGGTATGCATCATTGGATTGCTGTTGCATATTCAACTCCTGATGCAGCTGTTATT 1918130 Query 19707 GCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGG 19765 | ||| ||||| | | || || |||| ||||| || ||| ||||| |||||| | || Sbjct 1918131 GTTGT-TTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGAATGCCTTTAGG 1918189 Query 19766 TATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCA 19825 || | ||||||||| || |||||| | ||||| || || || ||||| |||||||| Sbjct 1918190 AATTTATGGTACTTTCAATTTTATGATTGTATTTCAGATTGAGCATAATATTCTTATGCA 1918249 Query 19826 TCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCA 19885 || || ||| || | |||| |||| ||||| || || || ||| |||||| | Sbjct 1918250 TCAATTTCACGTGTTAAGTGTGACTGGTGTATTTGGCAACTCCCTATTCAGTGCTATAAA 1918309 Query 19886 CGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTA 19945 | || || |||| || | || | ||| ||| || | Sbjct 1918310 TGATTCCTTAGTAACTTTCT----------------ACCTTA--ATGAATCTGCTAATGA 1918351 Query 19946 TGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTT 20005 || || || || || ||| | || | | ||| ||||| | ||||| || | || || Sbjct 1918352 AGGTTACAAATTTGGTCAAAAGGACAAAATCTATGATATTATAGCTGCTCATGATTATTT 1918411 Query 20006 TGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCT 20065 || ||||||| ||||||||||| ||||||||||||||||| |||| |||| || || Sbjct 1918412 TGTCGGATTGATCTTTCAATATGCAAGTTTCAATAATTCTCGTTTTTTA-ATTTTTTCCT 1918470 >seq7 Length=51758522 Score = 111 bits (122), Expect = 5e-20 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 19653 GGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTG 19712 || ||| | || ||||| || |||||| |||| || | |||| ||| |||||| Sbjct 47750165 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGT- 47750223 Query 19713 TTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTC 19771 ||||| | | || || |||| ||||| || ||| |||||||||||| | || || || Sbjct 47750224 TTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTC 47750283 Query 19772 TGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTT 19831 ||||||||| || |||||| | ||||| || || || || ||||| ||||||||||| || Sbjct 47750284 TGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq8 Length=59662532 Score = 89.7 bits (98), Expect = 1e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 20137 GTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCT 20195 ||||||| || ||||| || ||||||||| ||||| | | |||| || |||||| Sbjct 31293220 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTG-TAATAAATACCTGGGCT 31293278 Query 20196 GATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAAC 20255 ||| | | || |||||||||| || | ||||| ||||| || || ||||||||||| Sbjct 31293279 GATATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAAT 31293338 Query 20256 TTCCCACTTGATTTAGCTTCG 20276 ||||| || ||| ||||| || Sbjct 31293339 TTCCCTCTAGATCTAGCTGCG 31293359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144440385607248