Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq7 109 4e-19 seq3 105 5e-18 seq2 91.5 1e-13 >seq7 Length=51758522 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | || || ||||||||||| || |||||||| || || Sbjct 4237664 CCCCCACGAAGACGCAGGACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCA 4237605 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | |||||||| || || || ||| | || | || ||| |||||| || Sbjct 4237604 AGGGTTCTTCCATCCTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGG 4237545 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| ||||| | |||||| | | | | ||||| | |||| Sbjct 4237544 ATGCCCTCCTTGTCCTGAATTTTCGCCTTCACATTGTCGATGGTGTCAGAGCTCTCCACC 4237485 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||| ||||| || || || || || ||||| |||||||||||| Sbjct 4237484 TCAAGGGTAATGGTCTTACCCGTAAGGGTCTTGACGAAAATCTGCATT 4237437 >seq3 Length=52284309 Score = 105 bits (116), Expect = 5e-18 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| ||||| || ||||||||||| |||| ||| | || ||||||||| Sbjct 30315184 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGT 30315125 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA--TTT 16850 || || ||| ||||||||| ||| || || || | |||||| ||||| || ||| Sbjct 30315124 TTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGAATCTTT 30315065 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | || || | |||| |||| ||| |||||||| || | Sbjct 30315064 GCT--TTCACATTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTTTTCCCTG 30315007 Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936 |||| || || ||||| ||||||||| Sbjct 30315006 TCAGAGTCTTCACAAATATCTGCATT 30314981 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| ||||| || ||||||||||| |||| ||| | || ||||||||| Sbjct 30275242 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGT 30275183 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA--TTT 16850 || || ||| ||||||||| ||| || || || | |||||| ||||| || ||| Sbjct 30275182 TTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATCTTT 30275123 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | || || | |||| |||| ||| ||||| || || | Sbjct 30275122 GCT--TTCACATTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCTG 30275065 Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936 |||| || || ||||| ||||||||| Sbjct 30275064 TCAGAGTCTTCACAAATATCTGCATT 30275039 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| ||||| || || |||||||| |||| ||| | || ||||||||| Sbjct 30284886 TGGAGGGTGGATTCCTTCTGAATATTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGT 30284827 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA--TTT 16850 || || ||| ||||||||| ||| || || || | ||| |||||||| || ||| Sbjct 30284826 TTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTT 30284767 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | || || | |||| |||| ||| |||||||| || | Sbjct 30284766 GCT--TTCACATTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTTTTCCCTG 30284709 Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936 |||| || || ||||| ||||||||| Sbjct 30284708 TCAGAGTCTTCACAAATATCTGCATT 30284683 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| || || || ||||||||||| |||| ||| | || ||||||||| Sbjct 30310445 TGGAGGGTGGATTCTTTCTGAATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGT 30310386 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA--TTT 16850 || || ||| ||||||||| ||| || || || | |||||| ||||| || ||| Sbjct 30310385 TTACCAGCAAAAATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTT 30310326 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | || || | |||| |||| ||| ||||| || || | Sbjct 30310325 GCT--TTCACATTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCTG 30310268 Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936 |||| || || ||||| ||||||||| Sbjct 30310267 TCAGAGTCTTCACAAATATCTGCATT 30310242 >seq2 Length=49040938 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || || || || | || || ||||||||||| || ||||||||||| || Sbjct 4561884 CCACCTCTGAGTCTGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCA 4561825 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || || || ||| |||| |||| ||| ||||| || Sbjct 4561824 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGA 4561765 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||| | |||||| | | | | ||||| | |||| Sbjct 4561764 ATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTGTCAATGGTGTCTGAGCTCTCCACC 4561705 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||| || |||||||| || || || || || ||||||||| Sbjct 4561704 TCAAGGGTGATTGTCTTTCCGGTGAGGGTCTTCACGAATATCTGCATT 4561657 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | || || ||||||||||| || || |||||||| || Sbjct 4562112 CCACCACGAAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCA 4562053 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | |||||||| || || || || | || |||| ||| |||||| || Sbjct 4562052 AGGGTCCTCCCATCCTCCAACTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGA 4561993 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||||| ||| || | | | | ||||| ||| Sbjct 4561992 ATTCCCTCCTTGTCCTGAATTTTGGCCTTGACATTGTCAATGGTGTCAGAACTCTCAACC 4561933 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || |||| || ||||||||||||||||| Sbjct 4561932 TCCAGAGTGATGGTCTTCCCAGTCAAGGTCTTGACAAAAATCTGCAT 4561886 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | ||| | ||||||| | || Sbjct 7435701 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 7435642 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || ||||| || ||| || | |||||| ||||| || || Sbjct 7435641 TTTCCGGCGAATATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 7435582 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| | |||| || | |||||||||||| || | Sbjct 7435581 GC--CTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTTTTCCCCG 7435524 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || || |||||||| Sbjct 7435523 TAAGGGTTTTCACGAATATCTGCAT 7435499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405084504596920