Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq6 188 8e-43 seq2 147 2e-30 seq9 134 2e-26 seq1 131 2e-25 seq7 129 7e-25 seq8 111 2e-19 seq4 95.1 1e-14 >seq6 Length=31977256 Score = 188 bits (208), Expect = 8e-43 Identities = 416/618 (67%), Gaps = 22/618 (4%) Strand=Plus/Plus Query 167681 AATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCT 167740 |||| ||||| || || ||||| |||| | | ||||| | ||| || || || ||||| Sbjct 21888401 AATGTAATTGCATTCTCAGGTCCAATTGTTATTTTTGTTTATGTATTCCTTATTTATCCA 21888460 Query 167741 CTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTC 167800 || || |||| |||| |||||||| || ||| || ||||| | ||| | || Sbjct 21888461 CTGGGTCAGTTTGGTTGATTCTTTGCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATC 21888520 Query 167801 CTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTT 167860 | |||| | || | || |||| ||||| | ||||| || |||||| |||||||| Sbjct 21888521 ATCATATTTTTCCAAAGATTTCATACTTGGACATTAAACCCATTTCATATGCTGGGAGTT 21888580 Query 167861 GC--TGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATA 167918 | | |||| | || | |||| | || | || || ||||||| || ||||| | || Sbjct 21888581 GTCATTGTAT--TGGGTGTTGCACTACTATGCGCTATTCATGGTGCAACGGTAGAAAGTA 21888638 Query 167919 CTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCA---GG 167975 || | | |||||||||||| | ||| || || || ||| | | || || | Sbjct 21888639 CTTTATTTGAAGATGGTGATGGTGAAAATACATTTTGTGCTTTTAACCCAACCCAACCCG 21888698 Query 167976 AAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTG 168035 || | |||| ||||| ||| | |||| ||| || || ||||| ||||| ||||| ||| Sbjct 21888699 AAAA--AAACCTATTCAATGATTACTGTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTG 21888756 Query 168036 -CTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTT 168094 |||| ||||||| |||||| || || |||||| | || || || || | | | Sbjct 21888757 TTTTTCTCTAATAAGCATTGGTTACATTTATTTATGTTGTTTGTACCAGTAACTCGTTTA 21888816 Query 168095 TGGACAAGTTCTATTGGTATCATCGGTCTCGCACTT-AATCTTCGTGCTTATGACTTTGT 168153 || | ||| | |||| || | ||| ||| ||| || || ||||||||||| || || Sbjct 21888817 TGAATGAGTGTTCTTGGGATAGTTGGT-TCGTCCTTGAACCTACGTGCTTATGATTTCGT 21888875 Query 168154 GTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACAT 168213 ||||| ||| | | ||| ||| ||| | ||||| || || ||||| || Sbjct 21888876 TTCTCAAGAAATCTGTGCAATAGA----------TTTAAGACTTTATACACTAAAAATAT 21888925 Query 168214 CCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAAACTT 168273 || | || ||||| | ||||| |||||| | | | | || | ||||||||||| Sbjct 21888926 TTTCTTAAACGAAGGTATTCGTGCATGGATGACAACTCAAAATCAGTCTCATGAAAACTT 21888985 Query 168274 TGTATTCCCAGAAGAAGT 168291 | |||||| ||||| || Sbjct 21888986 TATATTCCTTGAAGAGGT 21889003 >seq2 Length=49040938 Score = 147 bits (162), Expect = 2e-30 Identities = 235/334 (70%), Gaps = 15/334 (4%) Strand=Plus/Plus Query 167981 GAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTC 168040 ||||||||||| ||||| |||||| || || ||||| ||||| ||||| ||||||| Sbjct 27893026 GAAACTTATTCAATGGTA--TGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTT 27893083 Query 168041 AGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACA 168100 |||| | || ||||||||| | || || || || || || | |||| Sbjct 27893084 TCCAATTA----------CATTTCTTTATGTTATTTGTACCAGTAATTGGTTTATGGATG 27893133 Query 168101 AGTTCTATTGGTATCATCGGTCTCGCACTTAATCTT-CGTGCTTATGACTTTGTGTCTC- 168158 ||| || || | || ||||| || ||| | ||| ||||||||||| || || |||| Sbjct 27893134 AGTGCTCTTAGGATAGTCGGTTAGGC-CTTGACCTTACGTGCTTATGATTTCGTTTCTCA 27893192 Query 168159 AGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCC 168218 || || || | ||||| || ||||| || ||||| | ||| || || ||||| || ||| Sbjct 27893193 AGAAATTTTGCGCAGCGGAAGATCCTGAATTTGATATTTTATACACCAAAAATATTCTCT 27893252 Query 168219 TCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAAACTTTGTAT 168278 | || ||||| | |||| ||||| || | ||| || | ||||||||| || ||| Sbjct 27893253 TAAACGAAGGTATTCGTGTGTGGATTGCAGCTCAAGATCAGCTTCATGAAAACCTTATAT 27893312 Query 168279 TCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 |||| || || || | ||| | || |||||||| Sbjct 27893313 TCCCTGAGGAGGTTCTACCACGTGGTAACGCTCT 27893346 >seq9 Length=37469608 Score = 134 bits (148), Expect = 2e-26 Identities = 347/518 (67%), Gaps = 8/518 (2%) Strand=Plus/Plus Query 166112 TGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCA 166170 |||||||||| | | |||| | |||| | ||| || || ||||||| | | || Sbjct 1917772 TGATGATTCCTATTGTGTTAACCACAACTTT-TGTATTTATTATCGCTTTTATCGTTGCC 1917830 Query 166171 CCTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAAC 166230 ||||| || |||| ||||| || | ||||| || || || ||| | ||||| ||| Sbjct 1917831 CCTCCAGTGGATAATGATGGTATTCACGAGCCTGTTTTTGGATCCCTACTTTATGGAAAC 1917890 Query 166231 AACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCC 166290 || ||||| |||||||| | | | | | || || | | | || || ||||| Sbjct 1917891 AATATCATTTCTGGTGCGACTATTCATACTTTTGCGGCTATAGATTTGCATTTTTATCCT 1917950 Query 166291 ATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTA 166350 || ||||||| | | |||||||||| || || |||| ||||||| | || | Sbjct 1917951 ATATGGGAAGTGACTTTTGTTGATGAATGCCTATACAACGACGGTCCTTATGAACTAATT 1918010 Query 166351 GTCTTCCACTTCCT-CATCG-GCATCTATGCCTACATGGGTCGTGAATGGGAA-TTGTCT 166407 || | || ||| | | | | | | || ||| ||||||||||||||||||||| || || Sbjct 1918011 GTTCTACATTTCTTACTTAGTGTAGCT-TGC-TACATGGGTCGTGAATGGGAACTTAACT 1918068 Query 166408 TACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCA 166467 | || | ||||||| || ||||||| || ||||| || | |||| |||||| | Sbjct 1918069 T-TCGTTTGGGTATGCATCATTGGATTGCTGTTGCATATTCAACTCCTGATGCAGCTGTT 1918127 Query 166468 TCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTG 166527 | || ||| || |||||||| | |||||||| || || || | |||||| | Sbjct 1918128 ATTGTTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGAATGCCTTTA 1918187 Query 166528 GGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATG 166587 || || ||| || ||||| | ||| |||| || || ||||| || || || ||| Sbjct 1918188 GGAATTTATGGTACTTTCAATTTTATGATTGTATTTCAGATTGAGCATAATATTCTTATG 1918247 Query 166588 CACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGG 166625 || | || || || | |||| | |||||||| || Sbjct 1918248 CATCAATTTCACGTGTTAAGTGTGACTGGTGTATTTGG 1918285 >seq1 Length=52205531 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 168008 CGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTT 168067 || || ||||| ||||| ||||| ||||||| |||||| |||||||| || |||||| Sbjct 38350081 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 38350140 Query 168068 ATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCA 168127 ||| | || || || || | || | |||| ||| || |||| | ||||| | || Sbjct 38350141 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCC 38350200 Query 168128 CTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAG 168187 || || | ||||||||||| || || ||||| ||| | | ||||| || ||||| || Sbjct 38350201 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 38350260 Query 168188 TTTGAAACTTTCTATACGAAAAACATCCTC 168217 ||||| |||||||| || ||||| || ||| Sbjct 38350261 TTTGAGACTTTCTACACCAAAAATATTCTC 38350290 >seq7 Length=51758522 Score = 129 bits (142), Expect = 7e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 166380 CTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 166439 |||||||||||||||||| ||| | || || || |||||||||||||||||| || Sbjct 47750128 CTACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGT 47750187 Query 166440 AGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 166499 ||||| || || ||||||||||| || | || || ||| || |||||||| | ||||| Sbjct 47750188 TGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCA 47750247 Query 166500 AGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGT 166559 ||| || || || | ||||| | || || ||| || ||||| | ||| |||| Sbjct 47750248 AGGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGT 47750307 Query 166560 CTTCCAAGCAGAGCACAACATCCTCATGCACCCCTT 166595 || || || ||||| || || || ||||| || || Sbjct 47750308 ATTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq8 Length=59662532 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 166901 GTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAG 166960 |||| || |||||||| ||| | | ||| |||| |||||||| | || || ||||| | Sbjct 31293220 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTG 31293279 Query 166961 ATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACT 167020 || | | ||||| ||| || ||||||||||| ||||| || ||||||||||| || | Sbjct 31293280 ATATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAATT 31293339 Query 167021 TCCCTCTGGATCTTGCTGC 167039 ||||||| ||||| ||||| Sbjct 31293340 TCCCTCTAGATCTAGCTGC 31293358 >seq4 Length=45960019 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/179 (73%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 168137 CGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACT 168196 ||||||||||| || || ||||| ||| | | ||| | | ||| | || ||||| ||| Sbjct 43482232 CGTGCTTATGATTTCGTTTCTCAAGAAATCCGTGCATGA-AAGATTCTGAATTTGATACT 43482290 Query 168197 TTCTATAC-GAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGC--TCCAGTA 168253 || || || ||||| || ||| | || ||||| | ||||| |||||||| | || | Sbjct 43482291 TTGTACACAAAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCAATTCA--A 43482348 Query 168254 GACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || || ||||||||| || ||||||| || || || | ||| | || |||||||| Sbjct 43482349 GATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 43482407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567226979996800