Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 132 1e-25 seq5 114 3e-20 seq10 91.5 3e-13 seq8 87.8 4e-12 seq7 87.8 4e-12 seq6 87.8 4e-12 seq4 87.8 4e-12 seq3 87.8 4e-12 seq2 87.8 4e-12 seq9 86.0 1e-11 seq206 84.2 4e-11 >seq1 Length=52205531 Score = 132 bits (146), Expect = 1e-25 Identities = 295/437 (68%), Gaps = 8/437 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| |||| ||| || || |||||||| | ||||| ||||| Sbjct 19482321 TCGAAGAAGTTGGTCTTCCCCTGCAGCGAAATAAGCTCCATCCAATCGAACGGGTTCTGC 19482380 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 |||||||| |||| ||||| || ||| | | || || |||||||| | Sbjct 19482381 ACATTGTACAGCTTCCCGCACCCAAGCGCACCGAGCAACCTATCAGCAACAAACTCAATG 19482440 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA-CAAGGAATTGCCTCACAGAT 251741 ||| | ||||| | |||||| || | || ||| ||||||| || || |||| Sbjct 19482441 TACACACTCATCAAGGCCCCGTTCATCCCCACCA-ACGCGCAAGGAAGCGCGTCGCAGAC 19482499 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 || ||| | ||| || ||||||| || ||| || || |||| | || | || Sbjct 19482500 AAACTCCCTCTCGATGTCAACTGCATCGCGCACGATCTCCCTCACGCGCTCCTCGGGGAG 19482559 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTG--GTGCAGACCCTCGTC 251858 ||||||| || | ||||| || || | ||| || || | ||| || |||||||| Sbjct 19482560 CTTGTTCCGCATGATAGAGTAGAGCAGGCACGCGAA---GTCGCAGTGGAGCCCCTCGTC 19482616 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| |||||||| | || || ||||| | || || ||| ||||||| Sbjct 19482617 GCGGGAGATGAGTTCGTTGGAGAAGGTAAGTCCCGGCATGAGGCCTCGCTTCTTGAGCCA 19482676 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | ||||||| ||| ||||| | | |||||||| || | | ||||| | Sbjct 19482677 GAAGATAGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCGACGCAGGCGAAGGCAACGAT 19482736 Query 251979 GCGCTCAGCAAACGACT 251995 |||||| || || |||| Sbjct 19482737 GCGCTCGGCGAAGGACT 19482753 >seq5 Length=40819286 Score = 114 bits (126), Expect = 3e-20 Identities = 194/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 218528 ACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGG 218587 |||| ||||| || | ||||| || ||| | | | ||||||||| |||| | Sbjct 2199481 ACAAAGAGCTTATATTGTTCTCTAGGGCGGATCTTCAAAGGTCTATTCCCTCTATGGTTG 2199540 Query 218588 ATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTC 218647 ||||||||||||| ||| | ||||| || || | |||| ||| ||| || | Sbjct 2199541 ATGGCCTCAAGCCTGGTCAGAGGAAGATTCTGTTCTGCTCATTTAAGAAGAAATTGTTCA 2199600 Query 218648 AAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACG 218707 ||||||| || || ||||||||| |||||| || || || |||| |||||||||| Sbjct 2199601 AAGAAATAAAAGTAGCTCAGTTTATTGGTTACGTGTCTGAGCACTCTGCTTACCATCACG 2199660 Query 218708 GTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACA 218767 ||||||| ||| | | | ||| | ||||||||| || | |||||| || |||| Sbjct 2199661 GTGAGCAAAGTTTATCTAGCACAATTATTAACATGGCACAAGATTTTGTGGGTAGCAACA 2199720 Query 218768 ACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 || | || | || || || ||||| |||||| ||||| Sbjct 2199721 ACGTCAATCTTCTTAAACCAAATGGTCAATTTGGTACTCGT 2199761 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4650132 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4650073 Query 142563 CCCCAC 142568 |||||| Sbjct 4650072 CCCCAC 4650067 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 7874649 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7874590 Query 142563 CCCCAC 142568 |||||| Sbjct 7874589 CCCCAC 7874584 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 8326296 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8326237 Query 142563 CCCCAC 142568 |||||| Sbjct 8326236 CCCCAC 8326231 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 8326720 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8326661 Query 142563 CCCCAC 142568 |||||| Sbjct 8326660 CCCCAC 8326655 >seq10 Length=43275151 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 42478593 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 42478652 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 42478653 AGCCCCAC 42478660 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 42479944 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 42480003 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 42480004 AGCCCCAC 42480011 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 41717131 ATTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 41717190 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 41717191 AGCCCCAC 41717198 >seq8 Length=59662532 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 53383221 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 53383280 Query 142563 CCCCAC 142568 |||||| Sbjct 53383281 CCCCAC 53383286 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 45421864 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 45421923 Query 142564 CCCA 142567 |||| Sbjct 45421924 CCCA 45421927 >seq7 Length=51758522 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 774383 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 774442 Query 142563 CCCCAC 142568 |||||| Sbjct 774443 CCCCAC 774448 >seq6 Length=31977256 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 27991170 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 27991111 Query 142563 CCCCAC 142568 |||||| Sbjct 27991110 CCCCAC 27991105 >seq4 Length=45960019 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 43337017 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 43337076 Query 142563 CCCCAC 142568 |||||| Sbjct 43337077 CCCCAC 43337082 >seq3 Length=52284309 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 419802 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 419861 Query 142563 CCCCAC 142568 |||||| Sbjct 419862 CCCCAC 419867 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 || ||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 8226570 AGTCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8226629 Query 142563 CCCCAC 142568 |||||| Sbjct 8226630 CCCCAC 8226635 >seq2 Length=49040938 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 572743 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 572802 Query 142563 CCCCAC 142568 |||||| Sbjct 572803 CCCCAC 572808 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 29174357 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 29174298 Query 142564 CCCAC 142568 ||||| Sbjct 29174297 CCCAC 29174293 >seq9 Length=37469608 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 6677873 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6677932 Query 142564 CCCAC 142568 ||||| Sbjct 6677933 CCCAC 6677937 >seq206 Length=5001 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 3239 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 3298 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 3299 CCCCACGTTGGGCGGA 3314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027827476235428