Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3 105 7e-18 seq2 104 3e-17 seq7 102 9e-17 seq206 95.1 1e-14 >seq3 Length=52284309 Score = 105 bits (116), Expect = 7e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || |||||||| | |||||| || | || |||||||||||||||||||||||| Sbjct 30284226 CCACCCCTTAAACGAAGCACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTAATCAGCA 30284167 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || | |||| || || ||||| |||||||| || || | ||||||||| | || Sbjct 30284166 AGGGTTCTTCCGTCCTCAAGTTGCTTCCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGG 30284107 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | || ||| ||||| ||| || |||| | | | ||||| ||| || Sbjct 30284106 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTGTCTGAACTC---TCG 30284050 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || ||||| || || || | ||||| |||||||||||||| Sbjct 30284049 ACCTCAAGGGTAATGGTCTTCCCAGTCAAGGTCTTGACAAAGATTTGCAT 30284000 Score = 105 bits (116), Expect = 7e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || |||||||| | |||||| || | || |||||||||||||||||||||||| Sbjct 30378406 CCACCCCTTAAACGAAGCACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTAATCAGCA 30378347 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || | |||| || || ||||| |||||||| || || | ||||||||| | || Sbjct 30378346 AGGGTTCTTCCGTCCTCAAGTTGCTTCCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGG 30378287 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | || ||| ||||| ||| || |||| | | | ||||| ||| || Sbjct 30378286 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTGTCTGAACTC---TCG 30378230 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || ||||| || || || | ||||| |||||||||||||| Sbjct 30378229 ACCTCAAGGGTAATGGTCTTCCCAGTCAAGGTCTTGACAAAGATTTGCAT 30378180 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| ||||||||||| || ||||| || | || || || |||||||||||||| Sbjct 30378142 TCCTTTTGGATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCAGCGAAA 30378083 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || | |||||| || | || | | || |||||| ||| || |||| | Sbjct 30378082 ATCAGCCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTA 30378023 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| |||||||| |||| ||||| |||||||| || | || || ||| Sbjct 30378022 TCAATGGTGTCAGAGGATTCCACCTCGAGGGTGATAGTTTTGCCTGTCAAAGTTTTCACA 30377963 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 30377962 AAGATCTGCAT 30377952 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||||||||| | |||||| || | ||| |||||| |||||||| ||||| || Sbjct 30309785 CCACCTCTTAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTATAATCTGCA 30309726 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || | | || || || || |||||||| || || || | |||||| || | || Sbjct 30309725 AGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCCGGAGGG 30309666 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||| |||||| ||| || ||||| | | | ||||| |||||| || Sbjct 30309665 ATACCCTCTTTGTCCTGGATCTTAGCTTTGACATTATCAATAGTGTCAGACGATTCTACC 30309606 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || ||||| ||||| || | || || || || || ||||| Sbjct 30309605 TCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30309559 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||||||||| || | ||| ||||| || ||||| |||||||| || || ||| | Sbjct 30379078 CGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTATAATCAGCAAGGGTACGCCCA 30379019 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || || || || || | ||| || || | ||| | || |||||| Sbjct 30379018 TCTTCCAGCTGCTTTCCGGCAAAGATAAGCCTCTGTTGATCTGGTGGTATGCCTTCCTTG 30378959 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| ||| | |||| ||| | | | | || || ||| |||||| || | || Sbjct 30378958 TCC-TGAATCTTTGCTTTCACATTGTCAATTGTATCAGAGCT---TTCCACCTCCAAGGT 30378903 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||||| || || || || ||||| ||||| ||||||||| Sbjct 30378902 AATGGTCTTTCCTGTCAGAGTCTTCACAAATATTTGCATT 30378863 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| ||||||||||| || ||||| || | || || || |||||||| || || Sbjct 30283962 TCCTTTTGGATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAG 30283903 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || |||| ||||||||| | ||| | | |||||||| | ||| | || | ||| | | Sbjct 30283902 ATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGT-CTTGAATCTTGGCTTTCACGTT 30283844 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| |||||| || |||| || ||||| ||||| || | || || || Sbjct 30283843 ATCAATGGTGTCAGACGATTCTACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCAC 30283784 Query 42197 AAAGATTTGCAT 42208 || || ||||| Sbjct 30283783 GAATATCTGCAT 30283772 Score = 93.3 bits (102), Expect = 5e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||||| |||| ||| ||||| || || || |||||||| || || ||| | || Sbjct 30284668 CAACACCAGGTGCAGAGTGGATTCCTTCTGGATGTTATAATCAGCAAGGGTACGCCCATC 30284609 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || |||||||| ||||| || || || | ||| || || | ||| | || |||||||| Sbjct 30284608 TTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGTTGATCTGGTGGTATGCCTTCCTTGTC 30284549 Query 42116 CATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174 | ||| | |||| || | | | | ||||| ||| || || | || |||| Sbjct 30284548 C-TGAATCTTTGCCTTCACATTATCGATGGTGTCAGAACTTTCAACCTCCAAAGTAATGG 30284490 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || || || | |||||||||||| ||||||||| Sbjct 30284489 TCTTTCCTGTCAACGTCTTTACAAAAATTTGCATT 30284455 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||| ||||||||||| || ||||| || | || || || |||||||| || || Sbjct 30314260 TCTTTTTGGATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAG 30314201 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || |||| ||||||||| | ||| | | |||||||| | ||| | || | ||| | | Sbjct 30314200 ATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGT-CTTGAATCTTGGCTTTCACGTT 30314142 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| |||||| || |||| || ||||| ||||| || | || || || Sbjct 30314141 ATCAATGGTGTCAGACGATTCTACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCAC 30314082 Query 42197 AAAGATTTGCAT 42208 || || ||||| Sbjct 30314081 GAATATCTGCAT 30314070 >seq2 Length=49040938 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 7435690 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 7435631 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 |||||| |||||||| || | || | || |||||||||| ||| || |||| | Sbjct 7435630 TATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 7435571 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || ||||| || | ||||||||||| ||||| || || || || Sbjct 7435570 GTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTTTTCCCCGTAAGGGTTTTCAC 7435511 Query 42197 AAAGATTTGCAT 42208 || || ||||| Sbjct 7435510 GAATATCTGCAT 7435499 Score = 102 bits (112), Expect = 9e-17 Identities = 167/237 (70%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | |||| ||| | ||| |||||| || || ||||| |||||| Sbjct 4561656 CCTCCACGGAGACGGAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 4561597 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| || ||||| || || ||||||||||| | ||| Sbjct 4561596 AGGGTGCGACCATCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 4561537 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 42157 | | ||||||||| ||| |||| | | ||| | | | |||||| ||| || Sbjct 4561536 ATCCCTTCCTTGTCC-TGAATTTTGGCCTTCACGTTGTCGATGGTGTCGGAACTC---TC 4561481 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 ||| || | || ||||| || || || | ||||| || ||||||||||| | ||| Sbjct 4561480 CACCTCAAGAGTTATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCATCTGCAC 4561424 >seq7 Length=51758522 Score = 102 bits (112), Expect = 9e-17 Identities = 142/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| ||||| || || || || ||| | || || |||||||| |||||||| Sbjct 4236716 TCCTTTTGAATGTTGTAGTCGGCGAGGGTGCGCCCATCCTCCAGCTGCTTTCCAGCGAAG 4236657 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || |||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 4236656 ATGAGACGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 4236598 Query 42138 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | ||||| |||| || || |||| |||||||| || || || || ||||| Sbjct 4236597 GTCAATAGTGTCGGAGCTC---TCGACCTCGAGAGTGATGGTCTTTCCGGTCAGTGTCTT 4236541 Query 42194 TACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 4236540 AACGAAGATCTGCAT 4236526 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | || |||||| || || || || || || || |||| | Sbjct 4237197 ACGCAACACCAAGTGGAGAGTTGACTCCTTCTGGATGTTATAGTCGGCGAGGGTCCTTCC 4237138 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||| || |||||||| || | | ||||||||| | || | | |||||| Sbjct 4237137 ATCCTCCAGCTGTTTTCCAGCGAAGATCAACCTCTGCTGGTCCGGGGGTATTCCCTCCTT 4237078 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 42168 |||| ||| || || | ||| | | | ||||| |||| ||||| |||| | Sbjct 4237077 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAGCTC---TCCACCTCGAGGG 4237022 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| ||||| || || ||||| |||||||| ||||| Sbjct 4237021 TGATGGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCAT 4236982 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||| || || | | || || | |||||| || || || Sbjct 4237629 CTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTTCCATCCTCCAACTGCTTCCCTGCAAA 4237570 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | | ||||||||| | ||| | || |||||||||| ||| |||| | || | Sbjct 4237569 GATCAACCTCTGCTGGTCCGGTGGGATGCCCTCCTTGTCC-TGAATTTTCGCCTTCACAT 4237511 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| ||||| || | || ||||| || ||||| || |||| Sbjct 4237510 TGTCGATGGTGTCAGAGCTC---TCCACCTCAAGGGTAATGGTCTTACCCGTAAGGGTCT 4237454 Query 42193 TTACAAAGATTTGCATT 42209 | || || || |||||| Sbjct 4237453 TGACGAAAATCTGCATT 4237437 >seq206 Length=5001 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 4747 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 4688 Query 57067 TACTACCGAGGATTG 57081 |||||||||||| || Sbjct 4687 TACTACCGAGGACTG 4673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543207992566720