Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq3 107 2e-18 seq2 100 3e-16 seq7 91.5 1e-13 >seq1 Length=52205531 Score = 120 bits (132), Expect = 3e-22 Identities = 537/828 (65%), Gaps = 47/828 (6%) Strand=Plus/Minus Query 52029 TGGAAGGTGGAGGAGGTTGATATGTCGAGGGACTATGACGACTTTG--AGTCTAAATTAA 52086 |||| || ||||||||| || | ||| |||| || || | ||| || || ||| Sbjct 19483102 TGGACGGCGGAGGAGGTCGACCTCTCGCAGGAC-ATC-CGGCATTGGGAGACTC---TAA 19483048 Query 52087 ACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCA 52146 ||||| ||||||| |||| |||| ||||| | || |||||||||||| ||||| ||| Sbjct 19483047 CCGATGGCGAGCGCCATTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGATGGCA 19482988 Query 52147 TCGTGAACATT---AACCTCATCGAG---TACATGCAGCGGAACGTTCCGGAACTC-GAG 52199 |||| | || ||||| || | |||| || || | ||| | ||| ||| Sbjct 19482987 TCGT---CCTTGAAAACCTTGCCGGCCGTTTCATGAAG--GA--GGTCCAGGTCTCCGAG 19482935 Query 52200 GCGCAATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAAT 52259 || | ||| || || || | ||||||| | | ||| | |||||||||| Sbjct 19482934 GCCCGCGCCTTCTACGGCTTTCAGATCGCCATCGAGAACATTCACTCCGAGATGTACAGC 19482875 Query 52260 CTGCTCATTGAGCAGCTG-ATAAAAGATGAGCACGAGCGCGACACG-CTGCTGAATGCGT 52317 || ||| |||| | || |||||||| | ||| ||| || || | | || Sbjct 19482874 CTCCTCCTTGAA-ACCTACATAAAAGACTCCAAAGAGAA-GACCCGTCTCTTCCACGCCA 19482817 Query 52318 TCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGC 52376 | || ||| | || ||||| ||| |||||| | ||||| | |||||||| | Sbjct 19482816 TTGA-CACTATTCCCTGCGTCACCAAGAAGGCTAACTGGGCCCTACGCTGGATCGACTCC 19482758 Query 52377 GACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttt 52436 | ||| | | ||||||||||| || ||||||||| |||||||| | || || Sbjct 19482757 G---CCGAGTCCTTCGCCGAGCGCATCGTTGCCTTCGCCTGCGTCGAGGGAATCTTCTTC 19482701 Query 52437 tCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACG 52496 ||||| |||||| | | ||||| | | || | | |||| | ||||| || || || Sbjct 19482700 TCCGGAAGCTTTTGCTCTATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGACTTACC 19482641 Query 52497 TTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC---CTC 52553 ||| |||||| | || || |||||||| || || ||| ||||| |||||| ||| Sbjct 19482640 TTCTCCAACGAACTCATCTCCCGCGACGAGGGGCTCCACTGCGACTTCGCGTGCCTGCTC 19482581 Query 52554 TACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG 52613 |||| | | ||| ||| || | | || | | |||| | || | Sbjct 19482580 TACTCTATCATGCG-------GAACAA--GCTCCCCGAGGAGCGCGTGAGGGAGATCGTG 19482530 Query 52614 ---GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTG 52670 || || || | ||||| | ||||||| | | |||||| || || | || || Sbjct 19482529 CGCGATGCAGTTGACATCGAGAGGGAGTTTGTCTGCGACGCGCTTCCTTGCGCGTTGGTG 19482470 Query 52671 GGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGT 52729 || ||||||| | | ||| | | |||||| |||||||| || ||| | || | ||| Sbjct 19482469 GGGATGAACGGGGCCTTGATGAGTGTGTACATTGAGTTTGTTGCTGATAGGTTGCTCGGT 19482410 Query 52730 GCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACAT 52789 || ||| ||| ||| | ||| | | || ||||| || | ||| | || Sbjct 19482409 GC-GCTTGGGTGCGGGAAGCTGTACAATGTGCAGAACCCGTTCGATTGGATGGAGCTTAT 19482351 Query 52790 TTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||| |||| ||||||||||| ||||||||||| || || ||||| Sbjct 19482350 TTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAGCGCGTGGGGGAGTA 19482303 Score = 109 bits (120), Expect = 5e-19 Identities = 160/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388 || ||||| ||| ||||| |||||||| || |||||||| || ||||| | | Sbjct 45626783 CCCTGCGTCGCCAAGAAGGCACAGTGGGCCTTGCGCTGGATCGA---CGCCACCGACTCT 45626839 Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448 | ||||||||||| || ||||||||| |||||||| | || || || |||||||| Sbjct 45626840 TTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCTGGCAGCTTC 45626899 Query 52449 GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508 | | || || | | || | | || | |||||||| || || ||| |||||| Sbjct 45626900 TGCTCGATATTCTGGCTCAAGAAGCGCGGTTTGATGCCCGGTCTCACCTTCTCCAACGAA 45626959 Query 52509 TTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCT 52554 | |||||||| || ||||| || ||| ||||| |||||||||| Sbjct 45626960 CTCATATCGCGAGATGAAGGGCTTCACTGCGACTTCGCGTGCCTCT 45627005 >seq3 Length=52284309 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| || ||||| ||| | ||| || ||||||||||| ||||| | Sbjct 30378145 GATTCCTTTTGGATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCAGCG 30378086 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | ||| || |||||||| |||||||||||||| ||| || || | Sbjct 30378085 AAAATCAGCCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTGGATCTTAGCCTTGACA 30378026 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | || |||||||||| || | ||||| || |||| |||||| Sbjct 30378025 TTATCAATGGTGTCAGAGGATTCCACCTCGAGGGTGATAGTTTTGCCTGTCAAAGTTTTC 30377966 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 30377965 ACAAAGATCTGCAT 30377952 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| || ||||| ||| | ||| || ||||||||||| ||||| | | Sbjct 30283965 GATTCCTTTTGGATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCA 30283906 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || | ||| ||||| || || ||||| || ||||| ||| | || | ||| | Sbjct 30283905 AAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTC-TTGAATCTTGGCTTTCAC 30283847 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||| || ||||||| || | || || ||||||| |||||| Sbjct 30283846 GTTATCAATGGTGTCAGACGATTCTACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTT 30283787 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 30283786 CACGAATATCTGCAT 30283772 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | || | || | | | |||||||| ||||| || || ||| Sbjct 30274355 CCACCTCTCAAACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGAATATTATAATCGGCA 30274296 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||||| ||||||||||| | | | || || | ||| || || ||||| Sbjct 30274295 AGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCTGGAGGG 30274236 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| |||||||| ||| || ||| | | || | |||||| | ||| || ||| Sbjct 30274235 ATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATGGTGTCAGACGATTCTACC 30274176 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || ||||||| |||||| || || |||||||| Sbjct 30274175 TCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30274129 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| ||||| | || || || | | | |||||||| ||||| || || || Sbjct 30309786 GCCACCTCTTAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTATAATCTGC 30309727 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | ||||| ||||||||||| | | | || || | ||| || |||||||| Sbjct 30309726 AAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCCGGAGG 30309667 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| |||||||| ||| || ||| | | || | ||||| | ||| || || Sbjct 30309666 GATACCCTCTTTGTCCTGGATCTTAGCTTTGACATTATCAATAGTGTCAGACGATTCTAC 30309607 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || ||||||| |||||| || || |||||||| Sbjct 30309606 CTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30309559 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || ||||| || ||||| ||| | ||| || ||||||||||| ||||| | | Sbjct 30314263 GATTCTTTTTGGATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCA 30314204 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || | ||| ||||| || || ||||| || ||||| ||| | || | ||| | Sbjct 30314203 AAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTC-TTGAATCTTGGCTTTCAC 30314145 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||| || ||||||| || | || || ||||||| |||||| Sbjct 30314144 GTTATCAATGGTGTCAGACGATTCTACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTT 30314085 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 30314084 CACGAATATCTGCAT 30314070 >seq2 Length=49040938 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 7435692 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCG 7435633 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || |||||||| || ||||| || || || || ||||| ||| || || | | Sbjct 7435632 AATATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA 7435573 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||| | ||||||||||| | || | ||||| || || || ||||| Sbjct 7435572 TTGT-CGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTTTTCCCCGTAAGGGTTTT 7435514 Query 138600 TACAAAAATCTGCATGGCT 138618 || || |||||||| ||| Sbjct 7435513 CACGAATATCTGCATCGCT 7435495 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 7451102 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTTCCGGCG 7451043 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| || ||||| || || || || ||||| ||| || || | | Sbjct 7451042 AAGATGAGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACA 7450983 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||| | ||||||||||| | || | || || || || || ||||| Sbjct 7450982 TTGT-CGATGGTGTCTGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTT 7450924 Query 138600 TACAAAAATCTGCATGGCT 138618 || || |||||||| ||| Sbjct 7450923 CACGAATATCTGCATTGCT 7450905 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | |||||||| || ||||||||||| | Sbjct 4561656 CCTCCACGGAGACGGAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 4561597 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || |||| |||| |||||||| |||||||| || Sbjct 4561596 AGGGTGCGACCATCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 4561537 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| |||| | || | ||| || | |||||||| ||||| Sbjct 4561536 ATCCCTTCCTTGTC-CTGAATTTTGGCCTTCACGTTG-TCGATGGTGTCGGAACTCTCCA 4561479 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || |||||||||| || || || || || ||||| Sbjct 4561478 CCTCAAGAGTTATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 4561430 >seq7 Length=51758522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||||| || | | |||| ||||||||||||||||||||| Sbjct 4236753 GCCACCACGGAGACGGAGAACTAGGTGAAGGGTTGATTCCTTTTGAATGTTGTAGTCGGC 4236694 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || ||| ||||| || || || || | |||| ||||| || ||||| || || Sbjct 4236693 GAGGGTGCGCCCATCCTCCAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCTGGGGG 4236634 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | ||||||| ||| || Sbjct 4236633 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCGGAGCTCTCGAC 4236574 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || || ||||| || || || || |||||||| Sbjct 4236573 CTCGAGAGTGATGGTCTTTCCGGTCAGTGTCTTAACGAAGATCTGCAT 4236526 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || || || | |||||||||| || ||||| |||||| Sbjct 4237208 CCACCACGAAGACGCAACACCAAGTGGAGAGTTGACTCCTTCTGGATGTTATAGTCGGCG 4237149 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||||| || ||||| || | |||| | | ||| |||||||| ||| Sbjct 4237148 AGGGTCCTTCCATCCTCCAGCTGTTTTCCAGCGAAGATCAACCTCTGCTGGTCCGGGGGT 4237089 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | ||||||| Sbjct 4237088 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGCTCTCCACC 4237029 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| || | || || || || ||||| || ||||| ||||||||| Sbjct 4237028 TCGAGGGTGATGGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCATG 4236981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258008077760