Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq9 215 6e-51 seq6 203 4e-47 seq7 154 2e-32 seq2 131 2e-25 seq8 120 4e-22 seq1 120 4e-22 >seq9 Length=37469608 Score = 215 bits (238), Expect = 6e-51 Identities = 417/609 (68%), Gaps = 6/609 (1%) Strand=Plus/Minus Query 7910 GTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCC 7969 ||||| | ||| ||| || |||||||| || || ||||| ||||||| || | Sbjct 1918324 GTTACTAAGGAATCATTTATAGCACTGAATAGGGAGTTGCCAAATACACCAGTCACACTT 1918265 Query 7970 AGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTG 8029 | || ||| || | ||||| || || || ||||| || || |||| ||| | ||| Sbjct 1918264 AACACGTGAAATTGATGCATAAGAATATTATGCTCAATCTGAAATACAATCATAAAATTG 1918205 Query 8030 AACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAG 8089 || |||||| | || || | |||||| | || || || |||||||| | ||||||| Sbjct 1918204 AAAGTACCATAAATTCCTAAAGGCATTCCATCCGAAAAGCTTCCTTGACCAATAGGATAG 1918145 Query 8090 ACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGA 8149 | | ||| ||| || | || ||| | |||| || ||||| ||| ||||| || Sbjct 1918144 ATCAAGAAAACAACAATAACAGCTGCATCAGGAGTTGAATATGCAACAGCAATCCAATGA 1918085 Query 8150 CGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAG--ATACCGA 8207 ||||||| | ||| | ||||||||| |||||||||||||| ||| || | || | Sbjct 1918084 TGCATACCCAAACGAAAGTTAAGTTCCCATTCACGACCCATGTA-GCA-AGCTACACTAA 1918027 Query 8208 TCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAG 8267 | ||| || | | || |||| ||||||| ||||||| || || ||||||| | Sbjct 1918026 GTAAGAAATGTAGAACAATTAGTTCATAAGGACCGTCGTTGTATAGGCATTCATCAACAA 1917967 Query 8268 AAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAG 8327 ||| ||||||| || ||||| || || | | | ||||| | ||| | ||| | | Sbjct 1917966 AAGTCACTTCCCATATAGGATAAAAATGCAAATCTATAGCCGCAAAAGTATGAATAGTCG 1917907 Query 8328 CACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGT 8387 ||||||| ||||| ||||| ||||| | || || ||| || || || | || || | Sbjct 1917906 CACCAGAAATGATATTGTTTCCATAAAGTAGGGATCCAAAAACAGGCTCGTGAATACCAT 1917847 Query 8388 CAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAGCAGCGAGC 8446 || | ||||| ||||| ||| ||| ||||||| || || ||||| || | | | | Sbjct 1917846 CATTATCCACTGGAGGGGCAACGATAAAAGCGATAATAAATACAAA-AGTTGTGGTTAAC 1917788 Query 8447 AGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGTTGGTGGAGGTT 8506 | |||||||||||| ||||| ||| | | | || ||| |||| | | || |||| Sbjct 1917787 ACAATAGGAATCATCAAAACACCAAACAATCATATGTAAAGAAGATTTTCGATGCTGGTT 1917728 Query 8507 ACCCAGTTA 8515 | ||||||| Sbjct 1917727 ATCCAGTTA 1917719 >seq6 Length=31977256 Score = 203 bits (224), Expect = 4e-47 Identities = 419/616 (68%), Gaps = 18/616 (3%) Strand=Plus/Minus Query 6284 ACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCCACTGGTGCCATCCAGGCACGT 6343 || |||||| | |||| |||||||||||| | |||| | || |||||| ||||| Sbjct 21889003 ACCTCTTCAAGGAATATAAAGTTTTCATGAGACTGATTTTGAGTTGTCATCCATGCACGA 21888944 Query 6344 AGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTCTCGAACTCTGGATCCTCCGCT 6403 | |||||| || || | || || || || || || |||| || ||| || | Sbjct 21888943 ATACCTTCGTTTAAGAAAATATTTTTAGTGTATAAAGTCTTAAA-TCT--AT-------T 21888894 Query 6404 GCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGGTT-AAGTGCAAGACCAATAAT 6462 || | ||| ||||| ||||| || |||||||| | ||||| ||| | | ||||| || Sbjct 21888893 GCACAGATTTCTTGAGAAACGAAATCATAAGCACGTAGGTTCAAGGACGA-ACCAACTAT 21888835 Query 6463 ACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAACAGCATAAAGAAATGTAGCCA 6522 |||| | | || | || | || || ||||||| |||||| ||||||| ||| Sbjct 21888834 CCCAAGAACACTCATTCATAAACGAGTTACTGGTACAAACAACATAAATAAATGTAACCA 21888775 Query 6523 ACGCTTATTGCTGAAGG-CGATACCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCA 6581 | ||||||| ||| | | |||||||| || ||||| || |||||| | || | || Sbjct 21888774 ATGCTTATTAGAGAAAAACAACCCCAAAGATTTGGGACCAAAAGCGATTAACAGTAATCA 21888715 Query 6582 TCGAATAGGTCTCCTCTTC---TTGTGTAGGCTCAAACGCCTTGAAAGTATTTGATTGTT 6638 | |||||||| | | ||| ||| || || | ||| || || |||||| | Sbjct 21888714 TTGAATAGGTTT--TTTTCGGGTTGGGTTGGGTTAAAAGCACAAAATGTATTTTCACCAT 21888657 Query 6639 CACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCTC 6698 ||||||||||||| |||||| | ||||| || ||||| |||||||| || || | ||| Sbjct 21888656 CACCATCTTCAAATAAAGTACTTTCTACCGTTGCACCATGAATAGCGCATAGTAGTGCAA 21888597 Query 6699 CACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGC 6758 |||| || | | | || |||| ||||||||| ||||| | ||||| | || || | Sbjct 21888596 CACCCAATACAATGACAACTCCCAGCATATGAAATGGGTTTAATGTCCAAGTATGAAATC 21888537 Query 6759 CCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACC 6818 || | || | | || | || | ||||| || ||| || |||||||| | Sbjct 21888536 TTTGGAAAAATATGATGATTTGAAAATTAGCTGCTCCATTAAAACTAGGAGCAAAGAATC 21888477 Query 6819 AACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCAATGGGACCAG 6878 ||| |||| || || ||||| || || || ||| | ||||| | | |||| ||||| | Sbjct 21888476 AACCAAACTGACCCAGTGGATAAATAAGGAATACATAAACAAAAATAACAATTGGACCTG 21888417 Query 6879 AAAACGCGATTGCATT 6894 | || || ||| |||| Sbjct 21888416 AGAATGCAATTACATT 21888401 >seq7 Length=51758522 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 7979 AAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCA 8038 || || ||||| || || || ||||| || || || |||| ||| | ||||| |||||| Sbjct 47750343 AATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAGTACCA 47750284 Query 8039 GAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAAT 8098 || || || | ||||||| | || || || |||||||| | |||||||| | ||| Sbjct 47750283 GAAATTCCTAAAGGCATACCATCCGAAAAGCTTCCTTGACCAATAGGATAGATCAAGAAA 47750224 Query 8099 ACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCT 8158 ||||||| || || ||||| ||||| || ||||| ||| ||||| ||||||||||| Sbjct 47750223 ACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCC 47750164 Query 8159 AGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 ||||| || |||||| || |||||||||||||| Sbjct 47750163 AGACGAAAACTAAGTTCTCATTCACGACCCATGTA 47750129 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 10210 AGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACACAGGTC 10269 || || ||||| |||| | | || ||||||||| || || || || ||||| || Sbjct 1562713 AGATCTTCCTCCTTGTGGGTGTGAATCACACAATCTGATGTTGGGTATGAGACACATGTG 1562654 Query 10270 AGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGATCTACC 10329 |||||| |||| || || || | || ||||| || |||||||| ||||| || Sbjct 1562653 AGAAGGTAACCCTTCTCCATTTGCTGTTCTTCAAGAAAAGATTGATCTGACTGATCCACA 1562594 Query 10330 GTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGTAGTTG 10389 | ||| | | |||| ||||||||| | || || || ||||||| ||| ||||| Sbjct 1562593 GCACCTGTAACCAGTTGTCCTGCACAAGTGGAGCATGCTCCAGCTCTGCATGAGTATGGT 1562534 Query 10390 AGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGT-ACTGATCGTCAG 10438 || || | || || | |||||| | ||||||||||| |||| || |||| Sbjct 1562533 AGCTCCACTCCAGCATTTTCAGCTGAATCCAGAATGTAACTG-TCATCAG 1562485 >seq2 Length=49040938 Score = 131 bits (144), Expect = 2e-25 Identities = 244/355 (69%), Gaps = 15/355 (4%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| |||| || ||||||||| | ||||| Sbjct 27893346 AGAGCGTTACCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAAGCTGATCT 27893287 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | ||| ||||| |||| | |||||| || || || || || ||||| || || | Sbjct 27893286 TGAGCTGCAATCCACACACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTATAAAATA 27893227 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGA-TCTCTTGTGAAACAAAGTCATAAGCTC-TAA 6440 || || || ||||| |||||||| | | | ||||| ||||| || |||||||| | ||| Sbjct 27893226 TCAAATTCAGGATCTTCCGCTGCGCAAAATTTCTTGAGAAACGAAATCATAAGCACGTAA 27893167 Query 6441 GGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAA 6500 ||| ||| | | ||| | || | || | |||| | ||| || || || |||| Sbjct 27893166 GGTCAAGGCCTA-ACCGACTATCCTAAGAGCACTCATCCATAAACCAATTACTGGTACAA 27893108 Query 6501 ACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACC 6560 | | |||||||||||||| |||| || || | |||||||| || |||| Sbjct 27893107 ATAACATAAAGAAATGTA----------ATTGGAAAAAGCAACCCCAAAGATTTGGGACC 27893058 Query 6561 AGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAA 6615 | || |||||||| ||||| ||||| || || | |||| || || | ||| Sbjct 27893057 AAAAGCGATTAGC--ATACCATTGAATAAGTTTCTTAAGCTTGGGTTGGGTTAAA 27893005 >seq8 Length=59662532 Score = 120 bits (132), Expect = 4e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 7535 GCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGA 7594 ||||| || || |||||||| || ||||||||||| || |||||||||||||| ||||| Sbjct 31293358 GCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATGACTTCCATACCAAGG 31293299 Query 7595 CCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATG 7654 ||| ||||| | | || |||||||| || | ||||||||||||| ||||| | | Sbjct 31293298 TTAGCTCGGTTAATAATATCAGCCCAGGTATTTATTACACGACCTTGACTATCAACTACG 31293239 Query 7655 GACTGGTTGAAGTTGAAAC 7673 || |||||||| || |||| Sbjct 31293238 GATTGGTTGAAATTAAAAC 31293220 Score = 105 bits (116), Expect = 8e-18 Identities = 178/258 (69%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 6328 TGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTCTCGAA 6387 ||||||||| ||||| | ||||| || || || || || ||| | | ||| ||||| || Sbjct 1232625 TGCCATCCACGCACGAATACCTT--TTTAAGAGAATATTTTTGTTGTTGAAAGTCTCAAA 1232682 Query 6388 CTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGGTTAAG 6447 || |||| |||||||| | ||| ||||| ||||| || |||||||| | | ||| | Sbjct 1232683 TTCAGGATATTCCGCTGCGCGGATTTCTTGAGAAACGAAATCATAAGCACATAAGTTCAC 1232742 Query 6448 TGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAACAGCAT 6507 || | ||| | | |||| | | || | ||| | || || ||||| | ||| Sbjct 1232743 GGCCAAACCGACCACCCCAAGAGCACTCATTCATAAACCAGTTACTGGTACAAATAACAT 1232802 Query 6508 AAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAGAAACG 6567 ||||||||||| |||| | || || | |||||||| || ||||| || || Sbjct 1232803 AAAGAAATGTAACCAATG---------AAAAGCAACCCCAAAGATTTGGGACCAAAAGCG 1232853 Query 6568 ATTAGCCGTGACCATCGA 6585 |||||| || ||||| || Sbjct 1232854 ATTAGCAGTAACCATTGA 1232871 >seq1 Length=52205531 Score = 120 bits (132), Expect = 4e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 6356 AATAGGATGTTCTTGGTATAGAACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCT 6415 || || || || ||||| ||||| ||||| || || ||||| |||||||| | ||| ||| Sbjct 38350292 AAGAGAATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCTTCCGCTGCGCGGATTTCT 38350233 Query 6416 TGTGAAACAAAGTCATAAGCTCTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAG 6475 || ||||| || |||||||| | | ||| || || | ||| | | |||| | Sbjct 38350232 TGAGAAACGAAATCATAAGCACGTAAGTTCAGGGCCAAACCGACTACCCCAAGAGCACTC 38350173 Query 6476 GTCCAAAGACCCATAACAGGAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTG 6535 |||| | ||| | || || ||||| | |||||||||||||| |||||| |||||| Sbjct 38350172 ATCCATAAACCAGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAA 38350113 Query 6536 AAGGCGATACCAAAGATCTGAGACCAGAAACGAT 6569 || || | |||||||| || ||||| || |||| Sbjct 38350112 AAAGCAACCCCAAAGATTTGGGACCAAAAGCGAT 38350079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622119294195520