Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 127 3e-24 seq9 102 1e-16 seq5 82.4 9e-11 seq2 82.4 9e-11 >seq1 Length=52205531 Score = 127 bits (140), Expect = 3e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| |||||||||||||| || |||||| || || |||||||| || Sbjct 19482602 GTGGAGCCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTAAGTCCCGGCATGAGGCC 19482661 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | ||||| || ||||||||||| ||||| || || Sbjct 19482662 TCGCTTCTTGAGCCAGAAGATAGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCGACGCA 19482721 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 ||||| |||| | |||||||| ||||| Sbjct 19482722 GGCGAAGGCAACGATGCGCTCGGCGAAGGA 19482751 Score = 125 bits (138), Expect = 9e-24 Identities = 187/262 (71%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || || || || || |||||||| || |||||| ||||| ||||| | ||| Sbjct 45626986 GTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGACCGGGCATCAAACC 45626927 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| |||| || || ||||||||||||||| ||||| || || Sbjct 45626926 GCGCTTCTTGAGCCAGAATATCGAGCAGAAGCTGCCAGAGAAGAAGATTCCCTCGACGCA 45626867 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| || | | |||||||| || ||| || | | || | ||| || || Sbjct 45626866 GGCGAAGGCGACGATGCGCTCGGCGAAAGAGTCGG---TGGCGTCGATCCAGCGCAAGGC 45626810 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 |||||||||||| || ||| || |||| ||| | | || || || | ||||| Sbjct 45626809 CCACTGTGCCTTCTTGGCGACGCAGGGGATGGTGTCTACGGCACGGAACAGGTGGTTCTT 45626750 Query 127771 TTCTGATGGA-TCTTTGATGTA 127791 ||| | |||| ||||||||||| Sbjct 45626749 TTC-GGTGGAGTCTTTGATGTA 45626729 >seq9 Length=37469608 Score = 102 bits (112), Expect = 1e-16 Identities = 178/256 (70%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 12735 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAG 12794 ||||| || ||| | ||| || || || ||||||| ||| ||||| | || || Sbjct 35454556 TCAAGAATGTCAGCCCTGTTAGTAGCTGCAATGACAATGATACCCGTATTACCCTCAAAT 35454615 Query 12795 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATA 12854 |||||||| || ||||| ||||| |||| ||| ||||| | |||||||||| | | Sbjct 35454616 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 35454672 Query 12855 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 ||| || | || | |||| | || || || |||||||| |||| ||||| || || Sbjct 35454673 CCAATTCCAGTACCCCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 35454732 Query 12912 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 || ||| || ||| |||| || | ||| || |||| ||||| ||||| | Sbjct 35454733 GGAGCATTCTCTTTGGC--CTTCTTGAATAAATCGCGAACTCGAGAAGCACCAACACCAA 35454790 Query 12970 CAAACATCTCCACAAA 12985 |||||||||| ||||| Sbjct 35454791 CAAACATCTCTACAAA 35454806 Score = 91.5 bits (100), Expect = 2e-13 Identities = 272/410 (66%), Gaps = 10/410 (2%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| || | || || || ||||| ||||| | ||||| ||| | | Sbjct 4469778 AACCCATCCATCTCCGTGAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTCCCA--C 4469721 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | | | ||||| | | ||| | |||||||||||||| || ||||||||||| || | Sbjct 4469720 CTCCAAGCCCCGCCCCTCTCTGCCTCCCGACGGCGTCAATCTCATCAATGAAAACAATGC 4469661 Query 12910 ACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 |||| || ||| | | | ||||| | ||| | ||| ||| ||||| || ||| Sbjct 4469660 ACGGCGCCTTATTCTTCGCCTTC-TCAAACAAATCCCTCACCCTCGACGCACCAACCCCC 4469602 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||||| |||||| || | | || | || || || || || | ||| ||| Sbjct 4469601 ACAAACAGCTCCACGAACTCTGAAGCCGCGCACGAGAAAAACGGCACTCCCGCTTCCCCC 4469542 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCA 13088 || | || | || || || |||||||| || || ||| ||| | |||| | |||| Sbjct 4469541 GCCACAGCCCTAGCTAGAAGCGTCTTCCCGGTTCCCGGTGGCCCGACCAGAA-GACACCC 4469483 Query 13089 CGT-GGGATCCTGGCACCACTTCCAAAGTAGCGCTC-GGGTTGTTTAAGAAAGTCCACGA 13146 | | || ||| | ||||| || ||| || ||||| || || ||| || || | Sbjct 4469482 CTTCGGAATCTTCGCACCCAGCGCAGTGTACTTATCAGGGTTCTTCAA-AAAATCAACAA 4469424 Query 13147 TTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTCACTGAAG 13196 |||| || ||| |||||| ||| ||| | ||||||| |||| Sbjct 4469423 CCTCTTGCAGCTCAAGCTTCGCTTGGTCTGCGCCCGCCACGTCACCGAAG 4469374 >seq5 Length=40819286 Score = 82.4 bits (90), Expect = 9e-11 Identities = 97/130 (75%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 177711 CGATGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCAC 177770 ||||| ||||| | |||| ||||||| || | |||||| ||||||||||||||||| | Sbjct 2196607 CGATGACGAACTCGGTGGAGAAGATGTTGGTGAGCTTGGCGCCGTAGCCATTGCGTCCGC 2196548 Query 177771 CAACAATTCTCTTCTT---GTTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAGG 177827 | | ||||||| |||||| |||||||| | || ||||| | ||| || ||| Sbjct 2196547 ---CGGTGGTCTTCTTGACGTTGTCGTCGTAGTTGCTGCTGGTGAGCAAGTGGCCGAAGA 2196491 Query 177828 TAAGTTCTGG 177837 | ||||| || Sbjct 2196490 TGAGTTCGGG 2196481 >seq2 Length=49040938 Score = 82.4 bits (90), Expect = 9e-11 Identities = 243/369 (66%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763 |||||| || ||||| | | | ||| |||||| ||||| | ||| || || || Sbjct 34691656 ATCAAATCGTCCTGGTCTCAATAAGGCAGAGTCAAGAATATCTGCCCTGTTAGTTGCTGC 34691597 Query 12764 GATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 12823 ||||||| ||| || || | || || |||||||| || ||||| ||||| || | Sbjct 34691596 AATGACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAAAAGTTGGTTCAG 34691537 Query 12824 GGTTTGTTCACGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTTACCGAC 12880 ||| || || | |||||||||| | |||| || | | | ||| | || || Sbjct 34691536 GGTCTGCTCTCTTTCATCATTCCCTCC---ACCAATTCCAGTTCCTCTTTGTCTTCCAAC 34691480 Query 12881 GGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA--AAG 12938 || |||||||| |||| || || || || || ||| || ||| |||| || Sbjct 34691479 AGCATCAATTTCATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGC--CTTCTTGAAC 34691422 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 12998 | ||| || |||| ||||| ||||| ||||||||||| ||||| | | | | | Sbjct 34691421 AAATCACGAACTCGAGAAGCACCAACACCAACAAACATCTCAACAAACTCAGAACCAG-A 34691363 Query 12999 CATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 13057 |||| | ||||| || | |||||| || || || ||| | |||||||| || Sbjct 34691362 TATTGAAAAAAAGGGAACACCAGCTTCACCAGCAATAGCCTTGGCTAACAGGGTCTTTCC 34691303 Query 13058 CGTCCCTGG 13066 || ||||| Sbjct 34691302 AGTTCCTGG 34691294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501770461280