Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 134 2e-26 seq3 114 1e-20 seq7 102 9e-17 >seq2 Length=49040938 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| |||| ||||||||||| |||||||| Sbjct 7435690 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 7435631 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||| | |||||||| || | ||| | || |||||||||| |||||| ||||| | Sbjct 7435630 TATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 7435571 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || ||||| || | ||||||||||| ||||| || ||||| || Sbjct 7435570 GTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTTTTCCCCGTAAGGGTTTTCAC 7435511 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 7435510 GAATATCTGCAT 7435499 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| |||| ||||||||||| |||||||| Sbjct 7451100 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTTCCGGCGAA 7451041 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||||||| |||||| ||||| | Sbjct 7451040 GATGAGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 7450981 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || ||||| || | ||||| || || ||||| || ||||| || Sbjct 7450980 GTCGATGGTGTCTGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTCAC 7450921 Query 46582 AAAGATTTGCATT 46594 || || |||||| Sbjct 7450920 GAATATCTGCATT 7450908 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | |||||||| | || |||||| ||||| |||||||| | Sbjct 4561656 CCTCCACGGAGACGGAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 4561597 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||| |||||||| |||| ||||||||||| | || Sbjct 4561596 AGGGTGCGACCATCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 4561537 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 46542 | | ||||||||| || || ||| | ||| | | | |||||| ||| || Sbjct 4561536 ATCCCTTCCTTGTCCTGAATTTTGGCCTTCA-CGTTGTCGATGGTGTCGGAACTC---TC 4561481 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || | || ||||| || || |||| || ||||| ||||||||||| Sbjct 4561480 CACCTCAAGAGTTATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 4561430 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| | || || | | | || || | |||||| |||||||| Sbjct 4562077 CTCCTTCTGGATATTGTAGTCAGCAAGGGTCCTCCCATCCTCCAACTGCTTCCCGGCGAA 4562018 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | | |||||||||| || || ||||| | Sbjct 4562017 GATCAGCCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATTTTGGCCTTGACATT 4561958 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| ||| || || |||| |||||||| || || |||| || || Sbjct 4561957 GTCAATGGTGTCAGAACTC---TCAACCTCCAGAGTGATGGTCTTCCCAGTCAAGGTCTT 4561901 Query 46579 AACAAAGATTTGCAT 46593 ||||| || ||||| Sbjct 4561900 GACAAAAATCTGCAT 4561886 >seq3 Length=52284309 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||||||||| |||| |||||||| | || ||||| ||||| || ||||| Sbjct 30378142 TCCTTTTGGATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCAGCGAAA 30378083 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | |||||| || | || | | || |||||| |||||| ||||| | Sbjct 30378082 ATCAGCCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTA 30378023 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| |||||||| || | ||||| |||||||| |||| ||||| ||| Sbjct 30378022 TCAATGGTGTCAGAGGATTCCACCTCGAGGGTGATAGTTTTGCCTGTCAAAGTTTTCACA 30377963 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 30377962 AAGATCTGCAT 30377952 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || |||||||| | ||||| || | || ||||||||| |||||||| || | Sbjct 30284228 TGCCACCCCTTAAACGAAGCACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTAATCAG 30284169 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || | |||| || || ||||| || ||||| |||| | ||||||||| | | Sbjct 30284168 CAAGGGTTCTTCCGTCCTCAAGTTGCTTCCCAGCGAAAATCAGCCTCTGCTGGTCTGGAG 30284109 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCG---CTCGATT 46541 | | || ||| ||||| |||||| ||||| | | | ||||| ||| | Sbjct 30284108 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTGTCTGAACTC---T 30284052 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || | || ||||| || || |||| || || |||||||||||||| Sbjct 30284051 CGACCTCAAGGGTAATGGTCTTCCCAGTCAAGGTCTTGACAAAGATTTGCAT 30284000 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || |||||||| | ||||| || | || ||||||||| |||||||| || | Sbjct 30378408 TGCCACCCCTTAAACGAAGCACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTAATCAG 30378349 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || | |||| || || ||||| || ||||| |||| | ||||||||| | | Sbjct 30378348 CAAGGGTTCTTCCGTCCTCAAGTTGCTTCCCAGCGAAAATCAGCCTCTGCTGGTCTGGAG 30378289 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCG---CTCGATT 46541 | | || ||| ||||| |||||| ||||| | | | ||||| ||| | Sbjct 30378288 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTGTCTGAACTC---T 30378232 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || | || ||||| || || |||| || || |||||||||||||| Sbjct 30378231 CGACCTCAAGGGTAATGGTCTTCCCAGTCAAGGTCTTGACAAAGATTTGCAT 30378180 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||||||||| |||| |||||||| | || ||||| ||||| || || || Sbjct 30283962 TCCTTTTGGATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAG 30283903 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | ||||||||| | || | | ||||||||| ||||| || | | Sbjct 30283902 ATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGCTTTCACGTTA 30283843 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| |||||| || || | || ||||| ||||| |||| ||||| || Sbjct 30283842 TCAATGGTGTCAGACGATTCTACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACG 30283783 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 30283782 AATATCTGCAT 30283772 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || |||||||||||||| |||| |||||||| | || ||||| ||||| || || || Sbjct 30314260 TCTTTTTGGATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAG 30314201 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | ||||||||| | || | | ||||||||| ||||| || | | Sbjct 30314200 ATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGCTTTCACGTTA 30314141 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| |||||| || || | || ||||| ||||| |||| ||||| || Sbjct 30314140 TCAATGGTGTCAGACGATTCTACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACG 30314081 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 30314080 AATATCTGCAT 30314070 >seq7 Length=51758522 Score = 102 bits (112), Expect = 9e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | || |||||| ||||| || ||||||| || || | | Sbjct 4237197 ACGCAACACCAAGTGGAGAGTTGACTCCTTCTGGATGTTATAGTCGGCGAGGGTCCTTCC 4237138 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| || || ||||| ||||| | ||||||||| | || | | |||||| Sbjct 4237137 ATCCTCCAGCTGTTTTCCAGCGAAGATCAACCTCTGCTGGTCCGGGGGTATTCCCTCCTT 4237078 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 |||| |||||| ||| | ||| | | | ||||| |||| ||||| || | | Sbjct 4237077 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAGCTC---TCCACCTCGAGGG 4237022 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| ||||| || || || || |||||||| ||||| Sbjct 4237021 TGATGGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCAT 4236982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565233397640160