Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1 129 7e-25 seq7 120 4e-22 seq9 113 5e-20 >seq1 Length=52205531 Score = 129 bits (142), Expect = 7e-25 Identities = 154/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || |||||||| |||| ||||| ||||||||||||||||| || ||||| || ||| || Sbjct 3417077 CAGAGGTTTGGAGTTCCAATGGGCTATGGAGGTCCTCATGCAGCTTTCTTGGCCACATCA 3417018 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAAT--TGTAGGTCAGTCAGTAGATAGTGAAG 153885 | |||| ||||| | ||| || || ||||| | ||||||| || ||| | | Sbjct 3417017 CAAGAGTACAAGAGGATGATGCCAGGAAGAATCATTGGGGTCAGT--GTTGATTCTTCTG 3416960 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || | || | || | ||| | || ||||| ||||||||||||||||| ||||| | Sbjct 3416959 GAAAGACTGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGG 3416900 Query 153946 CAACCAGTAACATCTGCACAGCTCAGG 153972 | ||||| ||||| ||||| || |||| Sbjct 3416899 CTACCAGCAACATTTGCACTGCCCAGG 3416873 Score = 102 bits (112), Expect = 9e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 171261 TTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTTATG 171320 || ||||| || || ||||| ||||||| || || ||| | | ||||| ||| ||||| Sbjct 38350084 TTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATG 38350143 Query 171321 TTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTT 171380 || || || || || | ||| | |||| || | || | || ||| | || || Sbjct 38350144 TTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCCCTG 38350203 Query 171381 AACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTC 171440 ||| | | || || ||||| || |||||||| || | ||||| ||||| || || || Sbjct 38350204 AACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTT 38350263 Query 171441 GAGACTTTCTACACTAAGAATATACT 171466 |||||||||||||| || ||||| || Sbjct 38350264 GAGACTTTCTACACCAAAAATATTCT 38350289 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 ||||| ||| ||||||||| |||||||| || || ||||||||||||||||| || Sbjct 3417578 GAGAACCCTGCTTGGTACACTCAGTACACTCCTTACCAGGCTGAGATATCTCAGGGGAGG 3417519 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | || | | | |||||||| || | ||||| || || || || || || || | Sbjct 3417518 CTTGAGTCACTGCTGAATTACCAGACCATGATCACTGACCTCACTGGCTTGCCCATGTCC 3417459 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || || | | ||||| | ||||| ||||| || |||||| Sbjct 3417458 AATGCCTCATTGCTTGATGAGGGCACTGCTGCAGCTGAGGCAATG 3417414 >seq7 Length=51758522 Score = 120 bits (132), Expect = 4e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 169765 GGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTA 169824 || |||||||||||||| ||||||||| || || || || | || || ||||| Sbjct 47750165 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTT 47750224 Query 169825 TTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 169884 ||||| | || || ||||||| || || || ||||||||||| |||| || || Sbjct 47750225 TTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCT 47750284 Query 169885 GGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTT 169943 ||||||||||| |||||| | || || || || |||||||| ||||| |||||||| || Sbjct 47750285 GGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq9 Length=37469608 Score = 113 bits (124), Expect = 5e-20 Identities = 163/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||| ||| || || || || ||||| |||| ||||| ||||| ||||| ||| Sbjct 12646627 GATATTGTTGTTGGGTCTACTCAGAGATTTGGGGTTCCAATGGGTTATGGGGGTCCACAT 12646568 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG- 153865 ||||| ||| | || || || | ||||||| || | ||| ||||| || || | || Sbjct 12646567 GCTGCGTTCCTGGCCACGTCACAAGAGTATAAAAGGATGATGCCTGGAAGGATCATTGGG 12646508 Query 153866 -TCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 ||||| || ||| | || || ||| | ||| | || | || ||||| |||| Sbjct 12646507 ATCAGT--GTTGATTCTTGTGGAAAGTCAGCTTTGAGAATGGCCTTGCAAACTAGGGAGC 12646450 Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972 |||||||| | || ||||| || ||||| ||||| ||||| ||||||| Sbjct 12646449 AGCATATCCGCAGGGACAAGGCCACCAGCAACATTTGCACTGCTCAGG 12646402 Score = 104 bits (114), Expect = 3e-17 Identities = 257/384 (67%), Gaps = 6/384 (2%) Strand=Plus/Plus Query 169570 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACAC 169629 ||||| ||||| ||||| |||||||| | ||| | | ||||| | | || Sbjct 1917882 TATGGAAACAATATCATTTCTGGTGCGACTATTCATACTTTTGCGGCTATAGATTTGCAT 1917941 Query 169630 TTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTAT 169689 || || || || ||||||| | |||||||||||| | || || | ||||||||| Sbjct 1917942 TTTTATCCTATATGGGAAGTGACTTTTGTTGATGAATGCCTATACAACGACGGTCCTTAT 1918001 Query 169690 CAGTTGGTAATCTTCCAC-TTCCTTA-TTGGTATCTCAGCATACATGGGAAGACAGTGGG 169747 | | | | ||| || || |||| || || | | |||||||| | | |||| Sbjct 1918002 GAACTAAT--TGTTCTACATTTCTTACTTAGTGTAGCTTGCTACATGGGTCGTGAATGGG 1918059 Query 169748 AACT-ATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTA 169806 |||| | | | | | || || |||| || |||||| ||||||||| || | || | Sbjct 1918060 AACTTAACTTTC-GTTTGGGTATGCATCATTGGATTGCTGTTGCATATTCAACTCCTGAT 1918118 Query 169807 TCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGT 169866 | |||| | | ||| ||||| | || || ||||||| || || || ||||| Sbjct 1918119 GCAGCTGTTATTGTTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGA 1918178 Query 169867 ATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAAC 169926 ||||| |||| || | ||||||||||| |||||| | || || || |||||||| Sbjct 1918179 ATGCCTTTAGGAATTTATGGTACTTTCAATTTTATGATTGTATTTCAGATTGAGCATAAT 1918238 Query 169927 ATTCTAATGCATCCTTTCCACATG 169950 ||||| ||||||| || ||| || Sbjct 1918239 ATTCTTATGCATCAATTTCACGTG 1918262 Score = 91.5 bits (100), Expect = 2e-13 Identities = 171/245 (70%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 169447 TGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGTTGC 169505 |||||||||||| | ||||||| ||| | || ||| | | ||| || || | || Sbjct 33213522 TGGTTTGGTGTTTTGATGATTCTTACTTTATTGACTGCAACTTC-TGTATTTATTATCGC 33213580 Query 169506 ATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAG-TAGCGGGTTCTT 169564 || |||| || ||||| | ||||| || || || | ||||| | | || | ||| Sbjct 33213581 TTTTATTGTTGCTCCTCCATTAGATATTGATGGTATTCGTGAACCTGATTTTGGATCCTT 33213640 Query 169565 TCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGAC 169624 ||| ||||| || || ||||| ||||||||| || |||| | || | ||||| || Sbjct 33213641 ACTT-TATGGAAATAATATCATTTCTGGTGCAATTATTCCTACTTCCACGGCTATAGGTT 33213699 Query 169625 TACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTC 169684 | || || || || || |||||||| | ||||||||||||| || ||||| | || Sbjct 33213700 TGCATTTTTATCCTATATGGGAAGCGACT-CTGTTGATGAATGATTATATAACAACGATC 33213758 Query 169685 CTTAT 169689 ||||| Sbjct 33213759 CTTAT 33213763 Score = 82.4 bits (90), Expect = 9e-11 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 153251 GCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGAT 153310 ||| ||| | | ||||| ||| |||||||| ||||||||||| || |||||||| Sbjct 12647120 GCGGAACATCATGGAGAACCCTGCGTGGTACACTCAGTACACTCCCTACCAGGCTGAGAT 12647061 Query 153311 ATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGG 153370 ||||||||| | | || | | | ||||||||||| | || |||| || || | Sbjct 12647060 ATCTCAGGGTCGTCTCGAGTCCCTCATGAATTACCAAACCATGGTCGCAGATCTCACTGC 12647001 Query 153371 ATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 | ||||| | ||||| || | | ||||||| ||||| || || ||||||||| Sbjct 12647000 TCTTCCAATGTCCAACGCTTCGTTGCTCGATGAAGGCACTGCGGCTGCTGAAGCAATG 12646943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579207673966720