Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq7 120 4e-22 seq1 113 5e-20 seq9 91.5 2e-13 seq8 86.0 7e-12 >seq7 Length=51758522 Score = 120 bits (132), Expect = 4e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 172183 GGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTG 172242 |||||| | || ||||| ||| ||||||||||| ||||| |||| || |||||| Sbjct 47750165 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTT 47750224 Query 172243 TTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 172302 ||| | | ||||| | ||||| || || || ||||||||||| |||| || || Sbjct 47750225 TTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCT 47750284 Query 172303 GGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTT 172361 ||||| ||||| |||||| | || || || || |||||||| ||||| |||||||| || Sbjct 47750285 GGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq1 Length=52205531 Score = 113 bits (124), Expect = 5e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 || |||||||| |||| ||||| || |||||||||||||| || ||||| || ||| || Sbjct 3417077 CAGAGGTTTGGAGTTCCAATGGGCTATGGAGGTCCTCATGCAGCTTTCTTGGCCACATCA 3417018 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAAT--TGTAGGTCAGTCAGTAGATAGCGAAG 158560 | |||| ||||| | ||| || || ||||| | ||||||| || ||| | Sbjct 3417017 CAAGAGTACAAGAGGATGATGCCAGGAAGAATCATTGGGGTCAGT--GTTGATTCTTCTG 3416960 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || | || | || | ||| | || ||||| |||||||||||||| || ||||| | Sbjct 3416959 GAAAGACTGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGG 3416900 Query 158621 CAACCAGTAACATCTGCACAGCACA 158645 | ||||| ||||| ||||| || || Sbjct 3416899 CTACCAGCAACATTTGCACTGCCCA 3416875 Score = 98.7 bits (108), Expect = 1e-15 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 159663 ACAGGTAGGTCTAGCAAAACCATGT-GACTATGGTGCAGATGTATGTCATCTAAACTTAC 159721 |||||| || || ||| ||| || | || || |||||||| |||||||| || | | Sbjct 3414290 ACAGGTGGGACTCACAAGCCCAGGTTGGATA-GGAGCAGATGTTTGTCATCTCAATCTCC 3414232 Query 159722 ATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAG 159781 | ||||||||||| || || |||||||| || || |||||| | ||||||||||||||| Sbjct 3414231 ACAAGACATTCTGCATCCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGTGTAA 3414172 Query 159782 CAAAACATCTCACACCATTTGTA 159804 ||||| | |||||||| || Sbjct 3414171 AGAAACACTTGGCACCATTTTTA 3414149 Score = 93.3 bits (102), Expect = 5e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 173683 TTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCATG 173742 || ||||| || || ||||| | || ||||| || ||| | | ||||| ||| | ||| Sbjct 38350084 TTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATG 38350143 Query 173743 TTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTGCACTT 173802 || || ||||| || | ||| | |||| | | || | || ||| | || || Sbjct 38350144 TTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCCCTG 38350203 Query 173803 AACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTC 173862 ||| | | || || || || || |||||||| || | ||||| |||||||| || || Sbjct 38350204 AACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTT 38350263 Query 173863 GAGACTTTCTACACTAAGAATATACT 173888 |||||||||||||| || ||||| || Sbjct 38350264 GAGACTTTCTACACCAAAAATATTCT 38350289 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 ||||| ||| ||||||||| |||||||| || || ||||||||||||||||| || Sbjct 3417578 GAGAACCCTGCTTGGTACACTCAGTACACTCCTTACCAGGCTGAGATATCTCAGGGGAGG 3417519 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | || | | | |||||||| || | ||||| || ||||| || | || || | Sbjct 3417518 CTTGAGTCACTGCTGAATTACCAGACCATGATCACTGACCTCACTGGCTTGCCCATGTCC 3417459 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || | | ||||| | ||||| ||||| || |||||| Sbjct 3417458 AATGCCTCATTGCTTGATGAGGGCACTGCTGCAGCTGAGGCAATG 3417414 >seq9 Length=37469608 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481 || |||| ||| || || || || ||||| |||| ||||| || || ||||| ||| Sbjct 12646627 GATATTGTTGTTGGGTCTACTCAGAGATTTGGGGTTCCAATGGGTTATGGGGGTCCACAT 12646568 Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG- 158540 ||||| ||| | || || || | ||||||| || | ||| ||||| || || | || Sbjct 12646567 GCTGCGTTCCTGGCCACGTCACAAGAGTATAAAAGGATGATGCCTGGAAGGATCATTGGG 12646508 Query 158541 -TCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 158599 ||||| || ||| || || ||| | ||| | || | || ||||| |||| Sbjct 12646507 ATCAGT--GTTGATTCTTGTGGAAAGTCAGCTTTGAGAATGGCCTTGCAAACTAGGGAGC 12646450 Query 158600 AGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACA 158645 |||||||| | || ||||| || ||||| ||||| ||||| || || Sbjct 12646449 AGCATATCCGCAGGGACAAGGCCACCAGCAACATTTGCACTGCTCA 12646404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 157926 GCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGAT 157985 ||| ||| | | ||||| ||| |||||||| ||||||||||| || |||||||| Sbjct 12647120 GCGGAACATCATGGAGAACCCTGCGTGGTACACTCAGTACACTCCCTACCAGGCTGAGAT 12647061 Query 157986 ATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGG 158045 ||||||||| | | || | | | ||||||||||| | || |||| ||||| | Sbjct 12647060 ATCTCAGGGTCGTCTCGAGTCCCTCATGAATTACCAAACCATGGTCGCAGATCTCACTGC 12647001 Query 158046 ACTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || | ||||| || | | ||||||| ||||| || || ||||||||| Sbjct 12647000 TCTTCCAATGTCCAACGCTTCGTTGCTCGATGAAGGCACTGCGGCTGCTGAAGCAATG 12646943 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| |||||||| || | || |||||||| || || || |||||||| || Sbjct 12643843 TGGAGCAGATGTTTGTCATCTGAATCTCCACAAGACATTTTGCATCCCTCATGGAGGAGG 12643784 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTTGTA 159804 || ||||| | ||||||||||| ||| ||||| | |||||||| || Sbjct 12643783 TGGCCCTGGAATGGGTCCTATTGGAGTAAAGAAACACTTGGCACCATTTTTA 12643732 >seq8 Length=59662532 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 172667 GTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGGGGTG 172726 |||| || ||||||||||| || || ||| | | ||| | | ||| |||| || Sbjct 31293220 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTG 31293279 Query 172727 ACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACT 172786 | || ||||| |||| ||||| ||||||||||| ||||||||| | ||||| || || | Sbjct 31293280 ATATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAATT 31293339 Query 172787 TCCCATTAGACCTTGCT 172803 |||| |||| || ||| Sbjct 31293340 TCCCTCTAGATCTAGCT 31293356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588045995746880