Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq6 212 7e-50 seq9 163 3e-35 seq7 145 9e-30 seq1 120 3e-22 seq8 93.3 5e-14 >seq6 Length=31977256 Score = 212 bits (234), Expect = 7e-50 Identities = 449/662 (68%), Gaps = 21/662 (3%) Strand=Plus/Plus Query 163909 TGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTT 163968 |||| |||||| | ||||| || || |||| | || ||| |||| | | |||| | Sbjct 21888305 TGGACTTTTGTTGTTCTCCATGGTGCTTTTGGATTAATACGTTCCATGTTACATCAATCT 21888364 Query 163969 GAACTTGCTCGCCTGATTGGAATCAGACCCT----ACAATGCGATTGCTTTCTCTGGTCC 164024 |||||||||| | || ||| | | ||| | |||| ||||| ||||| ||||| Sbjct 21888365 GAACTTGCTC-AATTTTTTCAATTACAACCTTATAATAATGTAATTGCATTCTCAGGTCC 21888423 Query 164025 TATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTT 164084 |||| | | || ||| ||| || || || || || |||||||| | |||| ||||| Sbjct 21888424 AATTGTTATTTTTGTTTATGTATTCCTTATTTATCCACTGGGTCAGTTTGGTTGATTCTT 21888483 Query 164085 CGCTCCATCTTTTGGAGTGGCAGC-AATCTTCAGATTCCTCTTATTCCTTCAAGGATTTC 164143 ||||| |||| | ||||| ||| |||| | || || |||| | ||| |||||| Sbjct 21888484 TGCTCCTAGTTTTAATGGAGCAGCTAATTTTCA-AATCATCATATTTTTCCAAAGATTTC 21888542 Query 164144 ATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCAT 164203 ||| ||||| || ||||| || |||||| ||||||||| | || | || | ||| Sbjct 21888543 ATACTTGGACATTAAACCCATTTCATATGCTGGGAGTTGTCATTGTATTGGGTGTTGCAC 21888602 Query 164204 TGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAG 164263 | |||| |||||||| || | || || |||| ||| || | ||||||||| || | Sbjct 21888603 TACTATGCGCTATTCATGGTGCAACGGTAGAAAGTACTTTATTTGAAGATGGTGATGGTG 21888662 Query 164264 CAAACACCTTTAAGGCGTTTGATTCGACACAGGAAG-AAGAGACTTATTCTATGGTCACT 164322 ||| || ||| || ||| | | || || | || | || ||||| ||| | ||| Sbjct 21888663 AAAATACATTTTGTGCTTTTAACCCAACCCAACCCGAAAAAAACCTATTCAATGATTACT 21888722 Query 164323 GCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTT-TCTAACAAGCGGTGGCTTCA 164381 | || ||||| ||||| || ||||| || |||| ||| ||||| |||| ||| | || Sbjct 21888723 GTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTCTCTAATAAGCATTGGTTACA 21888782 Query 164382 TTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGG 164441 ||| || ||||||||||| || || | || |||| | | |||| || |||| Sbjct 21888783 TTTATTTATGTTGTTTGTACCAGTAACTCGTTTATGAATGAGTGTTCTTGGGATAGTTGG 21888842 Query 164442 -CCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAG 164500 | | || | || || |||||||| ||||| || |||||| || | ||| ||| Sbjct 21888843 TTCGTCCT-TGAACCTACGTGCTTATGATTTCGTTTCTCAAGAAATCTGTGCAATAGA-- 21888899 Query 164501 ATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCAT 164560 || ||||||| || || || || || || || |||||||| | ||||||| Sbjct 21888900 --------TTTAAGACTTTATACACTAAAAATATTTTCTTAAACGAAGGTATTCGTGCAT 21888951 Query 164561 GG 164562 || Sbjct 21888952 GG 21888953 >seq9 Length=37469608 Score = 163 bits (180), Expect = 3e-35 Identities = 497/761 (65%), Gaps = 24/761 (3%) Strand=Plus/Plus Query 162432 GTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCT 162490 ||| || || |||||||||| | | |||| | |||| | ||| || || |||| | Sbjct 1917761 GTTTGGTGTTTTGATGATTCCTATTGTGTTAACCACAACTTT-TGTATTTATTATCGCTT 1917819 Query 162491 TCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCA 162550 | ||| ||| || || ||||| | || || || | || || || ||| || || Sbjct 1917820 TTATCGTTGCCCCTCCAGTGGATAATGATGGTATTCACGAGCCTGTTTTTGGATCCCTAC 1917879 Query 162551 TGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTC 162610 | ||||| ||||| ||||| |||||||| | ||| ||| || || | | | | Sbjct 1917880 TTTATGGAAACAATATCATTTCTGGTGCGACTATTCATACTTTTGCGGCTATAGATTTGC 1917939 Query 162611 ACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 162670 | || ||||| || ||||||| | | ||||||| || || || |||| ||||||| Sbjct 1917940 ATTTTTATCCTATATGGGAAGTGACTTTTGTTGATGAATGCCTATACAACGACGGTCCTT 1917999 Query 162671 TCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGG 162730 |||| | || | || ||| | | | | | ||||||||| |||||||||| Sbjct 1918000 ATGAACTAATTGTTCTACATTTCTTACTTAGTGTAGCTTGCTACATGGGTCGTGAATGGG 1918059 Query 162731 AACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTT 162789 |||| | ||| | ||||||| || ||||| ||| || ||||| || | |||| | Sbjct 1918060 AACTTAACTTTCGTTTGGGTATGCATCATTGGAT-TGCTGTTGCATATTCAACTCCTGAT 1918118 Query 162790 GCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCA 162849 ||||| | | || ||| || |||||||| | |||||||| || || || | | Sbjct 1918119 GCAGCTGTTATTGTTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGA 1918178 Query 162850 ATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 162909 ||||| || || || |||||| ||||| | ||| |||| || || ||||| || Sbjct 1918179 ATGCCTTTAGGAATTTATGGTACTTTCAATTTTATGATTGTATTTCAGATTGAGCATAAT 1918238 Query 162910 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTC 162969 ||||| ||||||| || ||| |||| |||| | ||||| || || || || ||| Sbjct 1918239 ATTCTTATGCATCAATTTCACGTGTTAAGTGTGACTGGTGTATTTGGCAACTCCCTATTC 1918298 Query 162970 AGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAG 163029 ||||| || | | ||| || || || | || || | | |||| ||| Sbjct 1918299 AGTGCTATAAATGATTCCTTAGTAACTT------TCTACCTT------AATGAATCTG-- 1918344 Query 163030 TCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCC 163089 || | |||||||| || |||||| | || | | || | || | || || Sbjct 1918345 ----CTAATGAAGGTTACAAATTTGGTCAAAAGGACAAAATCTATGATATTATAGCTGCT 1918400 Query 163090 CATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTG 163149 |||| ||| || | | |||||||| ||||||||| ||||| || || |||| || Sbjct 1918401 CATGATTATTTTGTCGGATTGATCTTTCAATATGCAAGTTTCAATAATTCTCGTT-TTTT 1918459 Query 163150 CACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 163190 | || ||||| | || ||| |||| | || || ||||| Sbjct 1918460 AATTTTTTCCTAGTTGTTTGG-CTGTAATAGGTATTTGGTT 1918499 >seq7 Length=51758522 Score = 145 bits (160), Expect = 9e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 162711 CTACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-G 162769 ||||||||| |||||||| ||||| || ||||| ||||||||||| ||||| ||| | Sbjct 47750128 CTACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGAT-TGCTG 47750186 Query 162770 TAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTC 162829 | ||||| || || ||||||||||| || | || || ||| || |||||||| | |||| Sbjct 47750187 TTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTC 47750246 Query 162830 AAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTG 162889 |||| || || || | ||||| || || || |||||| ||||| | ||| ||| Sbjct 47750247 AAGGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTG 47750306 Query 162890 TCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTT 162926 | || || || ||||| || ||||| |||||||| || Sbjct 47750307 TATTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq1 Length=52205531 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 164329 CGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTC 164388 ||||| ||||| || ||||| || ||||| ||||| || || || ||| | ||||| || Sbjct 38350081 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 38350140 Query 164389 ATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCT 164448 ||||| ||||| || || | ||| |||||| || |||| | | || | || Sbjct 38350141 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCC 38350200 Query 164449 CTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAG 164508 || || | |||||||| ||||| || |||||| || | ||||| ||||||||||| Sbjct 38350201 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 38350260 Query 164509 TTCGAGACTTTCTATACCAAGAACAT 164534 || ||||||||||| ||||| || || Sbjct 38350261 TTTGAGACTTTCTACACCAAAAATAT 38350286 >seq8 Length=59662532 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 163232 GTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAG 163291 |||| || |||||||| ||| | ||||| |||| |||||||| | || |||||||| | Sbjct 31293220 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTG 31293279 Query 163292 ACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACT 163351 | || | ||||| || | ||||||||||| ||||| || || |||||||| || | Sbjct 31293280 ATATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAATT 31293339 Query 163352 TCCCACTTGACCTGGCAGC 163370 |||| || || || || || Sbjct 31293340 TCCCTCTAGATCTAGCTGC 31293358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557579065381600