Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq6 221 1e-52 seq9 168 7e-37 seq2 161 1e-34 seq7 141 1e-28 seq1 140 4e-28 seq8 138 1e-27 seq4 122 1e-22 >seq6 Length=31977256 Score = 221 bits (244), Expect = 1e-52 Identities = 483/716 (67%), Gaps = 23/716 (3%) Strand=Plus/Plus Query 168771 TGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTT 168830 ||| ||||||| | ||||| || ||||| | |||| ||| |||| | | ||| | | Sbjct 21888305 TGGACTTTTGTTGTTCTCCATGGTGCTTTTGGATTAATACGTTCCATGTTACATCAATCT 21888364 Query 168831 GAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCT---ATTGCGTTCTCTGGTCC 168886 ||||| || | | | || | | | || || ||| | ||||| ||||| ||||| Sbjct 21888365 GAACTTGCTCAATTTTTTCAAT-TACAACCTTATAATAATGTAATTGCATTCTCAGGTCC 21888423 Query 168887 TATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTT 168946 || | | |||||||| || || || || || || |||||||| | |||| || || Sbjct 21888424 AATTGTTATTTTTGTTTATGTATTCCTTATTTATCCACTGGGTCAGTTTGGTTGATTCTT 21888483 Query 168947 CGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCA 169006 ||||| ||| | |||| | || | | || | | || | ||| |||| || Sbjct 21888484 TGCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATCATCATATTTTTCCAAAGATTTCA 21888543 Query 169007 TAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTT 169066 || |||||| | || |||||||||||| |||| || | | | ||||| | || | Sbjct 21888544 TACTTGGACATTAAACCCATTTCATATGCTGGGAGTTGTCATTGTATTGGGTGTTGCACT 21888603 Query 169067 GCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGC 169126 || | || |||||||||| || ||||| | |||| | | | |||||||||| | Sbjct 21888604 ACTATGCGCTATTCATGGTGCAACGGTAGAAAGTACTTTATTTGAAGATGGTGATGGTGA 21888663 Query 169127 AAATACTTTCAAAGCATTTGACAGCACTCAG---GAAGAGGAGACCTATTCAATGGTTAC 169183 |||||| || || ||| || || || ||| | | |||||||||||| |||| Sbjct 21888664 AAATACATTTTGTGCTTTTAACCCAACCCAACCCGAAAA--AAACCTATTCAATGATTAC 21888721 Query 169184 TGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTT-CAGTAATAAGAGGTGGTTGC 169242 || || || || ||||| || |||||||| ||| || | ||||||| ||||| | Sbjct 21888722 TGTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTCTCTAATAAGCATTGGTTAC 21888781 Query 169243 ATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTG 169302 |||| |||||| ||||||| || || | || | || | ||| | || || ||| Sbjct 21888782 ATTTATTTATGTTGTTTGTACCAGTAACTCGTTTATGAATGAGTGTTCTTGGGATAGTTG 21888841 Query 169303 GT-CTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAA 169361 || | | || | ||||| ||||||||||| || ||||| ||||| ||| | ||| ||| Sbjct 21888842 GTTCGTCCT-TGAACCTACGTGCTTATGATTTCGTTTCTCAAGAAATCTGTGCAATAGA- 21888899 Query 169362 GATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCA 169421 ||| |||| || ||||| || || || |||| ||||||||| |||||||| Sbjct 21888900 ---------TTTAAGACTTTATACACTAAAAATATTTTCTTAAACGAAGGTATTCGTGCA 21888950 Query 169422 TGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACT 169477 ||| | || || |||| ||||||| |||||| | |||| ||| || || || Sbjct 21888951 TGGATGACAACTCAAAATCAGTCTCATGAAAACTTTATATTCCTTGAAGAGGTTCT 21889006 >seq9 Length=37469608 Score = 168 bits (186), Expect = 7e-37 Identities = 390/585 (67%), Gaps = 2/585 (0%) Strand=Plus/Plus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | ||||||| | || | ||| || | | | ||| || ||| ||||||| ||| Sbjct 1917723 TGGATAACCAGCATCGAAAATCTTCTTTACATATGATTGTTTGGTGTTTTGATGATTCCT 1917782 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 | || | | |||| | ||| || || ||||| || ||| ||| ||||| ||||| Sbjct 1917783 ATTGTGTTAACCACAACTTT-TGTATTTATTATCGCTTTTATCGTTGCCCCTCCAGTGGA 1917841 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275 | |||||||| | ||| || ||| ||| || || | ||||| ||||| ||||| || Sbjct 1917842 TAATGATGGTATTCACGAGCCTGTTTTTGGATCCCTACTTTATGGAAACAATATCATTTC 1917901 Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGC 167335 |||||| | ||| | ||| | ||||| | | | || || ||||| || ||||||| Sbjct 1917902 TGGTGCGACTATTCATACTTTTGCGGCTATAGATTTGCATTTTTATCCTATATGGGAAGT 1917961 Query 167336 AGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTT 167395 | | || || || | ||||| | ||||||| |||| | ||| | || || Sbjct 1917962 GACTTTTGTTGATGAATGCCTATACAACGACGGTCCTTATGAACTAATTGTTCTACATTT 1918021 Query 167396 CCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTAT 167455 | | || | | | ||| ||||||||||| |||||||| | ||| | ||||| Sbjct 1918022 CTTACTTAGTGTAGCTTGCTACATGGGTCGTGAATGGGAACTTAACTTTCGTTTGGGTAT 1918081 Query 167456 GCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCT 167515 || || ||||| ||||||||| || |||| | || || | || ||| ||| | Sbjct 1918082 GCATCATTGGATTGCTGTTGCATATTCAACTCCTGATGCAGCTGTTATTGTTGTTTTCTT 1918141 Query 167516 CGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTAC 167575 |||||||| | |||||||| || || || | |||||| | || || | |||||| Sbjct 1918142 GATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGAATGCCTTTAGGAATTTATGGTAC 1918201 Query 167576 ATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATAT 167635 ||||| | ||| |||| || || ||||| || || || ||||| | || || | Sbjct 1918202 TTTCAATTTTATGATTGTATTTCAGATTGAGCATAATATTCTTATGCATCAATTTCACGT 1918261 Query 167636 GCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAAT 167680 | | | || |||| ||||| ||| || || |||||||| || Sbjct 1918262 GTTAAGTGTGACTGGTGTATTTGGCAACTCCCTATTCAGTGCTAT 1918306 >seq2 Length=49040938 Score = 161 bits (178), Expect = 1e-34 Identities = 238/334 (71%), Gaps = 15/334 (4%) Strand=Plus/Plus Query 169164 GAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTC 169223 || || ||||||||||| ||| || || || ||||| || |||||||| |||| || Sbjct 27893026 GAAACTTATTCAATGGTA--TGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTT 27893083 Query 169224 AGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACA 169283 ||| | |||||||||||| | ||||| || || || ||| | |||| Sbjct 27893084 TCCAATTA----------CATTTCTTTATGTTATTTGTACCAGTAATTGGTTTATGGATG 27893133 Query 169284 AGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTT-CGTGCTTATGACTTTGTTTCCCA 169342 ||| | | | || | ||| || || ||||| ||||||||||| || ||||| || Sbjct 27893134 AGTGCTCTTAGGATAGTCGGTTAGGC-CTTGACCTTACGTGCTTATGATTTCGTTTCTCA 27893192 Query 169343 AGAGATCA-GAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCT 169401 ||| || | ||||| |||||||| || ||||| | || |||||||| || || |||| Sbjct 27893193 AGAAATTTTGCGCAGCGGAAGATCCTGAATTTGATATTTTATACACCAAAAATATTCTCT 27893252 Query 169402 TGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGT 169461 | ||||||||| |||||| ||| | ||| || ||||| | |||||| ||| || | | Sbjct 27893253 TAAACGAAGGTATTCGTGTGTGGATTGCAGCTCAAGATCAGCTTCATGAAAACCTTATAT 27893312 Query 169462 TCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 |||||||||| || || || || ||||| || || Sbjct 27893313 TCCCTGAGGAGGTTCTACCACGTGGTAACGCTCT 27893346 >seq7 Length=51758522 Score = 141 bits (156), Expect = 1e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 167414 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 167473 ||| ||||||||||| || ||||| || ||||| ||||||||||| ||||| ||| Sbjct 47750128 CTACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGT 47750187 Query 167474 TGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 167533 |||||| || ||||| || || || || ||||||| ||| | |||||||| | ||||| Sbjct 47750188 TGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCA 47750247 Query 167534 AGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGT 167593 ||| || || || | |||||| | || || |||||||| ||||| | ||| |||| Sbjct 47750248 AGGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGT 47750307 Query 167594 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 167629 || || || ||||| || || || ||||| || || Sbjct 47750308 ATTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq1 Length=52205531 Score = 140 bits (154), Expect = 4e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 169191 CGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTT 169250 || || ||||| || |||||||| |||| || ||||| | ||||| ||||||||| Sbjct 38350081 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 38350140 Query 169251 ATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCT 169310 ||| | ||||| || || | ||| | |||| ||| | | || | | ||| | || Sbjct 38350141 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCC 38350200 Query 169311 CTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAG 169370 || ||| | ||||||||||| || ||||| ||||| ||| | ||||| |||||||| || Sbjct 38350201 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 38350260 Query 169371 TTTGAGACGTTCTACACCAAGAACATCCTCTT 169402 |||||||| ||||||||||| || || ||||| Sbjct 38350261 TTTGAGACTTTCTACACCAAAAATATTCTCTT 38350292 >seq8 Length=59662532 Score = 138 bits (152), Expect = 1e-27 Identities = 186/258 (72%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 169173 TCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAG 169232 |||||||||||||| || || || ||||| || |||||||| |||| || | || Sbjct 1232871 TCAATGGTTACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTT---TCAT--- 1232818 Query 169233 AGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATC 169292 ||||| |||||||||||| | ||||| || || | ||| | || | ||| | | Sbjct 1232817 ---TGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGAATGAGTGCTCTT 1232761 Query 169293 GGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGA 169352 || | | ||| | || | ||| | |||||||||| || ||||| ||||| ||| | Sbjct 1232760 GGGGTGGTCGGTTTGGCCGTGAACTTATGTGCTTATGATTTCGTTTCTCAAGAAATCCGC 1232701 Query 169353 GCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGT 169412 ||||| ||| |||| || |||||||| ||| ||| ||| || || ||||| || ||||| Sbjct 1232700 GCAGCGGAATATCCTGAATTTGAGACTTTCAACAACAAAAATATTCTCTTAAA--AAGGT 1232643 Query 169413 CTTCGTGCATGGTTAGCA 169430 ||||||| ||| | ||| Sbjct 1232642 ATTCGTGCGTGGATGGCA 1232625 >seq4 Length=45960019 Score = 122 bits (134), Expect = 1e-22 Identities = 140/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 169311 CTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAG 169370 || ||| | ||||||||||| || ||||| ||||| ||| | ||| | ||||| | || Sbjct 43482223 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGTGCATGA-AAGATTCTGAA 43482281 Query 169371 TTTGAGACGTTCTACACCAAGAAC-ATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGC 169429 ||||| || || ||||| || || || ||||| ||||||||| ||||||| ||| | || Sbjct 43482282 TTTGATACTTTGTACACAAAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGC 43482341 Query 169430 ACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAA 169489 | | ||||| |||||||| ||| || | ||||||||||| || || || || || || Sbjct 43482342 AATTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAA 43482401 Query 169490 TGCCCT 169495 || || Sbjct 43482402 CGCTCT 43482407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560603038619200