Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq6 279 6e-70 seq9 174 2e-38 seq7 150 2e-31 seq1 150 2e-31 seq2 149 8e-31 seq8 120 4e-22 seq4 107 2e-18 seq11 95.1 1e-14 >seq6 Length=31977256 Score = 279 bits (308), Expect = 6e-70 Identities = 496/714 (69%), Gaps = 25/714 (4%) Strand=Plus/Plus Query 183469 TGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTT 183528 |||| |||||| | ||||| ||||| |||| | || ||| |||| | | || | | Sbjct 21888305 TGGACTTTTGTTGTTCTCCATGGTGCTTTTGGATTAATACGTTCCATGTTACATCAATCT 21888364 Query 183529 GAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCT---ATTGCGTTCTCTGGTCCT 183585 |||||||||| || || | | ||||| ||| | ||||| ||||| ||||| Sbjct 21888365 GAACTTGCTCAATTTTTTCAATTACAACCTTATAATAATGTAATTGCATTCTCAGGTCCA 21888424 Query 183586 ATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTT 183645 |||| | ||||||| |||||||||||| |||||||||||||||| | || |||||| Sbjct 21888425 ATTGTTATTTTTGTTTATGTATTCCTTATTTATCCACTGGGTCAGTTTGGTTGATTCTTT 21888484 Query 183646 GCACCTAGTTTCGGGGTAGCAGC-AATCTTTAGAT--TCCTATTGTTCCTTCAGGGTTTC 183702 || |||||||| | |||||| ||| || | || || |||| ||| || | || Sbjct 21888485 GCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATCATCATATTTTTC---CAAAGATTT 21888541 Query 183703 CACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCA 183762 || | ||||| |||||||| || |||||| ||||||||| | || | || | ||| Sbjct 21888542 CATACTTGGACATTAAACCCATTTCATATGCTGGGAGTTGTCATTGTATTGGGTGTTGCA 21888601 Query 183763 CTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAA 183822 ||||| | ||||| ||||||| || ||||| | ||| || | ||||||||| || Sbjct 21888602 CTACTATGCGCTATTCATGGTGCAACGGTAGAAAGTACTTTATTTGAAGATGGTGATGGT 21888661 Query 183823 GCAAACACATTCAAGGCATTTGATTCCACTCAAGAAG-AAGAGACGTATTCTATGGTTAC 183881 | ||| ||||| || ||| | | || ||| | || | || ||||| ||| |||| Sbjct 21888662 GAAAATACATTTTGTGCTTTTAACCCAACCCAACCCGAAAAAAACCTATTCAATGATTAC 21888721 Query 183882 AGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGC-AATAAGCGTTGGTTGC 183940 | ||||| || ||||| |||||||| ||||||| ||| | ||||||| |||||| | Sbjct 21888722 TGTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTCTCTAATAAGCATTGGTTAC 21888781 Query 183941 ACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTG 184000 | || |||||||||||||| || || | || | || | | | |||| || ||| Sbjct 21888782 ATTTATTTATGTTGTTTGTACCAGTAACTCGTTTATGAATGAGTGTTCTTGGGATAGTTG 21888841 Query 184001 G-GCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAA 184059 | | | || | || || |||||||||||||| || |||||| ||| | ||| || Sbjct 21888842 GTTCGTCCT-TGAACCTACGTGCTTATGATTTCGTTTCTCAAGAAATCTGTGCAATAG-- 21888898 Query 184060 GATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTT-AATGAAGGACTACGTGC 184118 |||| |||| || ||||| || || || ||||| || ||||| | ||||| Sbjct 21888899 --------ATTTAAGACTTTATACACTAAAAATAT-TTTCTTAAACGAAGGTATTCGTGC 21888949 Query 184119 ATGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGT 184172 |||| | || || |||| | ||||| || |||||||| | || ||||| Sbjct 21888950 ATGGATGACAACTCAAAATCAGTCTCATGAAAACTTTATATTCCTTGAAGAGGT 21889003 >seq9 Length=37469608 Score = 174 bits (192), Expect = 2e-38 Identities = 385/569 (68%), Gaps = 10/569 (2%) Strand=Plus/Plus Query 181841 GTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTT 181899 ||||||||| ||||||| || | | |||| | |||| | ||| || || | |||| Sbjct 1917761 GTTTGGTGTTTTGATGATTCCTATTGTGTTAACCACAACTTT-TGTATTTATTATCGCTT 1917819 Query 181900 TCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCA 181959 | | | || ||||| || |||| || ||||| | ||| || || ||| || || Sbjct 1917820 TTATCGTTGCCCCTCCAGTGGATAATGATGGTATTCACGAGCCTGTTTTTGGATCCCTAC 1917879 Query 181960 TGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACG-CAATTGGTCTT 182018 | ||||| ||||| ||||| |||||||| | | | || || || | || | | | Sbjct 1917880 TTTATGGAAACAATATCATTTCTGGTGCGACTATTC-ATACTTTTGCGGCTATAGATTTG 1917938 Query 182019 CACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCT 182078 || || || || || ||||||| | | ||||||| || || || |||| |||||| Sbjct 1917939 CATTTTTATCCTATATGGGAAGTGACTTTTGTTGATGAATGCCTATACAACGACGGTCCT 1917998 Query 182079 TTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC---CTACATGGGACGTGAG 182135 | |||| ||||| | || ||| | | | | || || ||||||||| ||||| Sbjct 1917999 TATGAACTAATTGTTCTACATTTCTTACTTAG--TGTA-GCTTGCTACATGGGTCGTGAA 1918055 Query 182136 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCA 182195 ||||||||| | || || ||||||| || ||||| ||| ||||| || |||| Sbjct 1918056 TGGGAACTTAACTTTCGTTTGGGTATGCATCATTGGATTGCTGTTGCATATTCAACTCCT 1918115 Query 182196 GTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGAT 182255 | || || | || ||| ||||| |||||||| | |||||||| || || ||| Sbjct 1918116 GATGCAGCTGTTATTGTTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGAT 1918175 Query 182256 GCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCAC 182315 | |||||| | ||||| | || || ||||| | |||| | || || || |||||| Sbjct 1918176 GGAATGCCTTTAGGAATTTATGGTACTTTCAATTTTATGATTGTATTTCAGATTGAGCAT 1918235 Query 182316 AACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTG 182375 || ||||||||||||| || ||| |||| |||| | |||||||| || || || Sbjct 1918236 AATATTCTTATGCATCAATTTCACGTGTTAAGTGTGACTGGTGTATTTGGCAACTCCCTA 1918295 Query 182376 TTTAGTGCAATGCACGGTTCTTTGGTTAC 182404 || ||||| || | | ||| || || || Sbjct 1918296 TTCAGTGCTATAAATGATTCCTTAGTAAC 1918324 Score = 98.7 bits (108), Expect = 1e-15 Identities = 176/253 (70%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 181818 AACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCA 181877 || |||||||| || | | ||||||||||| ||||||| | ||| | ||| | ||| Sbjct 33213501 AAAAATCGTCTTTACATAAGATGGTTTGGTGTTTTGATGATTCTTACTTTATTGACTGCA 33213560 Query 181878 ACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCG 181936 | | ||||| || || | ||||| | | || ||||| | ||||| || ||||| || Sbjct 33213561 A-CTTCTGTATTTATTATCGCTTTTATTGTTGCTCCTCCATTAGATATTGATGGTATTCG 33213619 Query 181937 CGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC 181996 ||||| | ||| || | | ||||| || || ||||| |||||||| || | || Sbjct 33213620 TGAACCTGATTTTGGATCCTTACTTTATGGAAATAATATCATTTCTGGTGCAATTATTCC 33213679 Query 181997 ATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGA 182056 | |||| || || ||| | || || || || || |||||||| | ||| ||||||| Sbjct 33213680 TACTTCCACGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGC-GACTCTGTTGATGA 33213738 Query 182057 GTGGCTGTATAAC 182069 || | |||||| Sbjct 33213739 ATGATTATATAAC 33213751 >seq7 Length=51758522 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 182120 CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGT 182179 ||||||||| ||||| || |||||| || || | ||||||||||| ||||| ||| Sbjct 47750128 CTACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGT 47750187 Query 182180 AGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCA 182239 ||||| || ||||| || || || || ||||||| ||||| |||||||| | ||||| Sbjct 47750188 TGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCA 47750247 Query 182240 AGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGT 182299 ||| || || |||| ||||| | ||||| || || || ||||| | |||| | || Sbjct 47750248 AGGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGT 47750307 Query 182300 TTTCCAAGCTGAGCACAACATTCTTATGCATCCCTT 182335 || || |||||||| || |||||||||||||| || Sbjct 47750308 ATTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq1 Length=52205531 Score = 150 bits (166), Expect = 2e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 183887 ATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCT 183946 |||| || ||||| |||||||| |||||||| ||| |||||| |||||||| || |||| Sbjct 38350079 ATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCT 38350138 Query 183947 TTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTG 184006 ||||||| ||||| || || | ||| | ||| | | || |||| | | || | | Sbjct 38350139 TTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGG 38350198 Query 184007 CTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAG 184066 | || || | |||||||||||||| || |||||| ||| | ||||| |||||||| | Sbjct 38350199 CCCTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTG 38350258 Query 184067 AATTTGAGACGTTCTACACAAAGAACATACT 184097 |||||||||| |||||||| || || || || Sbjct 38350259 AATTTGAGACTTTCTACACCAAAAATATTCT 38350289 >seq2 Length=49040938 Score = 149 bits (164), Expect = 8e-31 Identities = 240/342 (70%), Gaps = 15/342 (4%) Strand=Plus/Plus Query 183860 AAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGT 183919 |||| || ||||| ||||| || ||||| || ||||| |||||||| |||||||| | Sbjct 27893024 AAGAAACTTATTCAATGGTAT--GCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTT 27893081 Query 183920 TTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGG 183979 || |||| | || ||||||||||| ||||| || || || ||| | ||| Sbjct 27893082 TTTCCAATTA----------CATTTCTTTATGTTATTTGTACCAGTAATTGGTTTATGGA 27893131 Query 183980 TCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTT-CGTGCTTATGATTTTGTAAGT 184038 | | || || | || | | || | | ||| | ||| |||||||||||||| || | Sbjct 27893132 TGAGTGCTCTTAGGAT-AGTCGGTTAGGCCTTGACCTTACGTGCTTATGATTTCGTTTCT 27893190 Query 184039 CAAGAGA-TCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATACT 184097 ||||| | | | ||||| |||||||| |||||||| | || ||||| || || || || Sbjct 27893191 CAAGAAATTTTGCGCAGCGGAAGATCCTGAATTTGATATTTTATACACCAAAAATATTCT 27893250 Query 184098 TCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAATTTTAT 184157 | || ||||| | |||| ||| | ||| || ||||| | ||||| || |||| Sbjct 27893251 CTTAAACGAAGGTATTCGTGTGTGGATTGCAGCTCAAGATCAGCTTCATGAAAACCTTAT 27893310 Query 184158 ATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 ||| || |||||||| |||| | || || ||||||| ||| Sbjct 27893311 ATTCCCTGAGGAGGTTCTACCACGTGGTAACGCTCTTTAATG 27893352 >seq8 Length=59662532 Score = 120 bits (132), Expect = 4e-22 Identities = 182/258 (71%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 183871 TCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAG 183930 || |||||||| || ||||| || ||||| |||||||| |||||||| ||| Sbjct 1232871 TCAATGGTTACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTT--------- 1232821 Query 183931 CGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATT 183990 | |||||| || ||||||||||| ||||| || || | ||| | || | | || || Sbjct 1232820 CATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGAATGAGTGCTCTT 1232761 Query 183991 GGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGA 184050 || | | || | || | || | ||||||||||||| || |||||| ||| | Sbjct 1232760 GGGGTGGTCGGTTTGGCCGTGAACTTATGTGCTTATGATTTCGTTTCTCAAGAAATCCGC 1232701 Query 184051 GCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGA 184110 ||||| ||| |||| ||||||||||| ||| ||| || || || | |||||| |||| Sbjct 1232700 GCAGCGGAATATCCTGAATTTGAGACTTTCAACAACAAAAATATTC-TCTTAA-AAAGGT 1232643 Query 184111 CTACGTGCATGGTTAGCA 184128 | ||||| ||| | ||| Sbjct 1232642 ATTCGTGCGTGGATGGCA 1232625 Score = 116 bits (128), Expect = 5e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 182641 GTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAG 182700 |||| || |||||||| ||| | ||||| |||| |||||||| | || || ||||| | Sbjct 31293220 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTG 31293279 Query 182701 ATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACT 182760 || | | ||||| ||| |||||||||||||| |||||||| ||||| || || || | Sbjct 31293280 ATATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAATT 31293339 Query 182761 TCCCACTAGATCTTGCTGC 182779 |||| |||||||| ||||| Sbjct 31293340 TCCCTCTAGATCTAGCTGC 31293358 >seq4 Length=45960019 Score = 107 bits (118), Expect = 2e-18 Identities = 146/197 (74%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 184006 GCTCTTAATCTT-CGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCC 184064 |||| | | ||| |||||||||||||| || |||||| ||| | ||| | ||||| | Sbjct 43482219 GCTCCTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGTGCATGA-AAGATTC 43482277 Query 184065 AGAATTTGAGACGTTCTACACAAAGAACATACT-TCTT-AATGAAGGACTACGTGCATGG 184122 |||||||| || || |||||||| || ||| | |||| || ||||| | ||||| ||| Sbjct 43482278 TGAATTTGATACTTTGTACACAAA-AAAATATTCTCTTAAACGAAGGTATTCGTGCGTGG 43482336 Query 184123 TTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGA 184182 | ||| | ||||| || ||||| || ||||||| || |||||||| |||| | Sbjct 43482337 ATGGCAATTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGT 43482396 Query 184183 GGCAATGCTCTTTGATG 184199 || || ||||||| ||| Sbjct 43482397 GGAAACGCTCTTTAATG 43482413 >seq11 Length=50367376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 183868 TATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAAT 183927 ||||| |||||||| | ||||| || ||||| |||||||| |||||||| ||| |||| Sbjct 3718489 TATTCAATGGTTACTCCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAAT 3718548 Query 183928 AAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCC 183962 || | |||||| || ||||||||||| ||||| || Sbjct 3718549 AAACATTGGTTACATTTCTTTATGTTATTTGTACC 3718583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611690586490400