Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq9 223 4e-53 seq6 223 4e-53 seq7 197 2e-45 seq2 165 9e-36 seq1 134 2e-26 seq8 123 3e-23 seq4 120 3e-22 >seq9 Length=37469608 Score = 223 bits (246), Expect = 4e-53 Identities = 379/547 (69%), Gaps = 2/547 (0%) Strand=Plus/Plus Query 164811 GTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCAT 164869 ||| |||||| | ||||| || | || | || | || ||||| ||||||| || | Sbjct 1917761 GTTTGGTGTTTTGATGATTCCTATTGTGTTAACCACAACT-TTTGTATTTATTATCGCTT 1917819 Query 164870 TCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAA 164929 | |||| ||| || || ||||| | ||||||||||| || ||||| || || ||| Sbjct 1917820 TTATCGTTGCCCCTCCAGTGGATAATGATGGTATTCACGAGCCTGTTTTTGGATCCCTAC 1917879 Query 164930 TGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTC 164989 | || || ||||| ||||| |||||||| ||| ||| | || || | | | Sbjct 1917880 TTTATGGAAACAATATCATTTCTGGTGCGACTATTCATACTTTTGCGGCTATAGATTTGC 1917939 Query 164990 ACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTT 165049 | || |||||||| ||||||| | | |||||||| | ||||||| ||||||| Sbjct 1917940 ATTTTTATCCTATATGGGAAGTGACTTTTGTTGATGAATGCCTATACAACGACGGTCCTT 1917999 Query 165050 ACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGG 165109 | | | |||| | || ||| | | ||||||||||||||||||||||||| |||| Sbjct 1918000 ATGAACTAATTGTTCTACATTTCTTACTTAGTGTAGCTTGCTACATGGGTCGTGAATGGG 1918059 Query 165110 AACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCG 165169 |||| | || | ||||||| || ||||||| || |||||| | |||| | Sbjct 1918060 AACTTAACTTTCGTTTGGGTATGCATCATTGGATTGCTGTTGCATATTCAACTCCTGATG 1918119 Query 165170 CTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTA 165229 | |||| | | |||||| || |||||||| | |||||||| || || || ||||| | Sbjct 1918120 CAGCTGTTATTGTTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGAA 1918179 Query 165230 TGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACA 165289 ||||| | || || | ||||||||| || | |||| | || || || || ||||| | Sbjct 1918180 TGCCTTTAGGAATTTATGGTACTTTCAATTTTATGATTGTATTTCAGATTGAGCATAATA 1918239 Query 165290 TTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCT 165349 |||||||||||| || ||| || | | || |||| ||||| || || || ||| Sbjct 1918240 TTCTTATGCATCAATTTCACGTGTTAAGTGTGACTGGTGTATTTGGCAACTCCCTATTCA 1918299 Query 165350 CTGCTAT 165356 |||||| Sbjct 1918300 GTGCTAT 1918306 Score = 96.9 bits (106), Expect = 4e-15 Identities = 182/264 (69%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 164788 AATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCT 164847 || || |||||||| | | ||||| |||||| | ||||| | ||| | | || Sbjct 33213501 AAAAATCGTCTTTACATAAGATGGTTTGGTGTTTTGATGATTCTTACTTTATTGACTGCA 33213560 Query 164848 ACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCG 164906 || | ||| ||||||| || || || | |||||| || | || |||||||||||||| Sbjct 33213561 ACT-TCTGTATTTATTATCGCTTTTATTGTTGCTCCTCCATTAGATATTGATGGTATTCG 33213619 Query 164907 TGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCC 164966 |||||||| || || || | || || || || ||||| |||||||| | |||| Sbjct 33213620 TGAACCTGATTTTGGATCCTTACTTTATGGAAATAATATCATTTCTGGTGCAATTATTCC 33213679 Query 164967 GTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGA 165026 |||| | || || || | || || |||||||| |||||||| | | | ||||| Sbjct 33213680 TACTTCCACGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGC-GACTCTGTTGATGA 33213738 Query 165027 ATGGTTGTACAACGGTGGTCCTTA 165050 ||| || || ||| | |||||| Sbjct 33213739 ATGATTATATAACAACGATCCTTA 33213762 >seq6 Length=31977256 Score = 223 bits (246), Expect = 4e-53 Identities = 483/715 (68%), Gaps = 21/715 (3%) Strand=Plus/Plus Query 166449 TGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTT 166508 ||| | ||||||| |||||| |||||||||| |||| ||| |||| | | || | | Sbjct 21888305 TGGACTTTTGTTGTTCTCCATGGTGCTTTTGGATTAATACGTTCCATGTTACATCAATCT 21888364 Query 166509 GAAATCGCTCGTCTAGTAGGTATTCGTCCGTACAAT---GCAATCGCTTTTTCTGGTCCT 166565 ||| | |||| | | | | || || ||| | ||| || || || ||||| Sbjct 21888365 GAACTTGCTCAATTTTTTCAATTACAACCTTATAATAATGTAATTGCATTCTCAGGTCCA 21888424 Query 166566 ATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTC 166625 |||| | | || ||| ||| || || || || || |||||||| | |||| || || Sbjct 21888425 ATTGTTATTTTTGTTTATGTATTCCTTATTTATCCACTGGGTCAGTTTGGTTGATTCTTT 21888484 Query 166626 GCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCAC 166685 ||||| ||| | |||| | || | | || || | || | ||| |||| || Sbjct 21888485 GCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATCATCATATTTTTCCAAAGATTTCAT 21888544 Query 166686 AACTGGACACTGAACCCATTTCATATGATGGGTGTAG-CAG-GTATTCTCGGTGGTGCAT 166743 | |||||| | ||||||||||||||| |||| || | || ||||| |||| |||| Sbjct 21888545 ACTTGGACATTAAACCCATTTCATATGCTGGGAGTTGTCATTGTATTG--GGTGTTGCAC 21888602 Query 166744 TGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGG 166803 | || | || || ||||||| || ||||| | ||| | | | |||||||||| | Sbjct 21888603 TACTATGCGCTATTCATGGTGCAACGGTAGAAAGTACTTTATTTGAAGATGGTGATGGTG 21888662 Query 166804 CAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAA-CCTATTCAATGGTTACA 166862 |||||| || || || || | || ||| ||| ||| ||||||||||| |||| Sbjct 21888663 AAAATACATTTTGTGCTTTTAACCCAACCCAACCCGAAAAAAACCTATTCAATGATTACT 21888722 Query 166863 GCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAG-TAATAAGAGGTGGTTGCA 166921 | || |||| |||||| || ||||| || ||| ||| ||||||| ||||| || Sbjct 21888723 GTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTCTCTAATAAGCATTGGTTACA 21888782 Query 166922 TTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGG 166981 ||| |||||| ||||||| || || | || | || | ||| | || || |||| Sbjct 21888783 TTTATTTATGTTGTTTGTACCAGTAACTCGTTTATGAATGAGTGTTCTTGGGATAGTTGG 21888842 Query 166982 T-CTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGG 167040 | | | || | ||||| ||||||||||| || ||||| |||||| | | ||| ||| Sbjct 21888843 TTCGTCCT-TGAACCTACGTGCTTATGATTTCGTTTCTCAAGAAATCTGTGCAATAGA-- 21888899 Query 167041 ATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTT 167100 ||| | || || || || || || ||| |||| || || ||||| ||| | | Sbjct 21888900 --------TTTAAGACTTTATACACTAAAAATATTTTCTTAAACGAAGGTATTCGTGCAT 21888951 Query 167101 GGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCT 167155 ||||| ||||| |||| ||||||| | || |||||| |||||||||||| Sbjct 21888952 GGATGACAACTCAAAATCAGTCTCATGAAAACTTTATATTCCTTGAAGAGGTTCT 21889006 >seq7 Length=51758522 Score = 197 bits (218), Expect = 2e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 165079 GGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCT 165138 |||||||||||||||||||||||||| || ||||| || || || |||||||||||| Sbjct 47750117 GGTGTAGCTTGCTACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCT 47750176 Query 165139 TGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTAT 165198 |||||| || |||||| || ||||| || || ||| | || |||||| || ||||| Sbjct 47750177 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTAT 47750236 Query 165199 CCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAAC 165258 ||| | |||||||| || || || |||||||||||| | || || ||||||||||| || Sbjct 47750237 CCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAAT 47750296 Query 165259 TATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTT 165305 | |||| | || || || || || ||||| |||||||||||||| || Sbjct 47750297 TTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq2 Length=49040938 Score = 165 bits (182), Expect = 9e-36 Identities = 272/389 (70%), Gaps = 15/389 (4%) Strand=Plus/Plus Query 166791 GATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTAT 166850 |||||||| |||||||| || | || || | || |||| ||||||| ||| Sbjct 27892975 GATGGTGATAGTGCAAATACAATCTGTGTTTTTAACCCAACCCAAGCTTAAGAAACTTAT 27893034 Query 166851 TCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAG 166910 |||||||| || || |||| |||||| || ||||| || |||| ||| ||| | Sbjct 27893035 TCAATGGTAT--GCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATTA- 27893091 Query 166911 AGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATC 166970 |||||||||||| | ||||| || || || ||| | |||| ||| | | Sbjct 27893092 ---------CATTTCTTTATGTTATTTGTACCAGTAATTGGTTTATGGATGAGTGCTCTT 27893142 Query 166971 GGTATTATTGGTCTTGCTCTCAACCTT-CGTGCTTATGACTTTGTTTCCCAAGAACTAAG 167029 | || | ||| || || ||||| ||||||||||| || ||||| |||||| | Sbjct 27893143 AGGATAGTCGGTTAGGC-CTTGACCTTACGTGCTTATGATTTCGTTTCTCAAGAAATTTT 27893201 Query 167030 G-GCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGG 167088 | ||||| || |||||||| ||||| | || || ||||| || |||||||| || || | Sbjct 27893202 GCGCAGCGGAAGATCCTGAATTTGATATTTTATACACCAAAAATATTCTCTTAAACGAAG 27893261 Query 167089 GTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAG 167148 |||| ||| ||||| ||| || ||||| | |||||| | | |||||||||| | Sbjct 27893262 GTATTCGTGTGTGGATTGCAGCTCAAGATCAGCTTCATGAAAACCTTATATTCCCTGAGG 27893321 Query 167149 AGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 ||||||| || | ||||||||||| ||| Sbjct 27893322 AGGTTCTACCACGTGGTAACGCTCTTTAA 27893350 >seq1 Length=52205531 Score = 134 bits (148), Expect = 2e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 166869 CGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTT 166928 |||| |||||| || ||||| || |||| ||| ||||| | ||||| ||||||||| Sbjct 38350081 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 38350140 Query 166929 ATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCT 166988 ||| | ||||| || || | ||| | |||| ||| | | || | | ||| | || Sbjct 38350141 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCC 38350200 Query 166989 CTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAG 167048 || ||| | ||||||||||| || ||||| |||||| | | ||||| || |||||||| Sbjct 38350201 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 38350260 Query 167049 TTTGAAACCTTCTATACCAAGAACATTCTCTT 167080 ||||| || ||||| ||||| || |||||||| Sbjct 38350261 TTTGAGACTTTCTACACCAAAAATATTCTCTT 38350292 >seq8 Length=59662532 Score = 123 bits (136), Expect = 3e-23 Identities = 182/258 (71%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 166851 TCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAG 166910 ||||||||||| || || |||| |||||| || ||||| || |||| ||| | Sbjct 1232871 TCAATGGTTACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTCAT------ 1232818 Query 166911 AGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATC 166970 ||||| |||||||||||| | ||||| || || | ||| | || | ||| | | Sbjct 1232817 ---TGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGAATGAGTGCTCTT 1232761 Query 166971 GGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGG 167030 || | | ||| | || | ||| | |||||||||| || ||||| |||||| | | Sbjct 1232760 GGGGTGGTCGGTTTGGCCGTGAACTTATGTGCTTATGATTTCGTTTCTCAAGAAATCCGC 1232701 Query 167031 GCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGT 167090 ||||| || ||||||| ||||| || ||| | | ||| || |||||||| || | ||| Sbjct 1232700 GCAGCGGAATATCCTGAATTTGAGACTTTCAACAACAAAAATATTCTCTTAAA--AAGGT 1232643 Query 167091 ATGCGTTCTTGGATGGCA 167108 || ||| | ||||||||| Sbjct 1232642 ATTCGTGCGTGGATGGCA 1232625 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 165611 GTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTG 165670 |||| || |||||||| || | ||||||||||| | || ||| ||||||| Sbjct 31293220 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTG 31293279 Query 165671 ACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACT 165730 | || | ||||| ||| || ||||||||||| |||||||| ||||| ||||| || | Sbjct 31293280 ATATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAATT 31293339 Query 165731 TCCCCCTCGACCTCGCTGC 165749 |||| || || || ||||| Sbjct 31293340 TCCCTCTAGATCTAGCTGC 31293358 >seq4 Length=45960019 Score = 120 bits (132), Expect = 3e-22 Identities = 142/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 166989 CTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAG 167048 || ||| | ||||||||||| || ||||| |||||| | | ||| | | ||| |||| Sbjct 43482223 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGTGCATGA-AAGATTCTGAA 43482281 Query 167049 TTTGAAACCTTCTATAC-CAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGC 167107 ||||| || || || || || || |||||||| || || ||||| ||| | |||||||| Sbjct 43482282 TTTGATACTTTGTACACAAAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGC 43482341 Query 167108 AACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAA 167167 || | ||||| |||||||| | | |||||||||| |||||||| || | || || Sbjct 43482342 AATTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAA 43482401 Query 167168 CGCTCTCTAA 167177 |||||| ||| Sbjct 43482402 CGCTCTTTAA 43482411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563655811601920