Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq9 149 2e-31 seq7 140 1e-28 seq8 89.7 2e-13 >seq9 Length=37469608 Score = 149 bits (164), Expect = 2e-31 Identities = 350/526 (67%), Gaps = 2/526 (0%) Strand=Plus/Minus Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665 || ||||| |||| |||| | || ||| || |||||||||| ||||| || || | Sbjct 1918285 CCAAATACACCAGTCACACTTAACACGTGAAATTGATGCATAAGAATATTATGCTCAATC 1918226 Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA 5725 || ||||| | |||||| || ||||||||| | || || | |||||| ||||| || Sbjct 1918225 TGAAATACAATCATAAAATTGAAAGTACCATAAATTCCTAAAGGCATTCCATCCGAAAAG 1918166 Query 5726 CTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGA 5784 ||||| || || | ||| || | || || || | || | || ||| | || | ||| Sbjct 1918165 CTTCCTTGACCAATAGGATAGATCAAGAAAACAACAATAA-CAGCTGCATCAGGAGTTGA 1918107 Query 5785 ATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCC 5844 |||||| || |||||| | |||| || || | | |||||||||||| || || Sbjct 1918106 ATATGCAACAGCAATCCAATGATGCATACCCAAACGAAAGTTAAGTTCCCATTCACGACC 1918047 Query 5845 CAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATT 5904 || ||| || | || || | ||| || | || | |||| || || || | || Sbjct 1918046 CATGTAGCAAGCTACACTAAGTAAGAAATGTAGAACAATTAGTTCATAAGGACCGTCGTT 1917987 Query 5905 GTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGC 5964 ||| || |||||||| | | | ||||||| || ||||| || || || | || || Sbjct 1917986 GTATAGGCATTCATCAACAAAAGTCACTTCCCATATAGGATAAAAATGCAAATCTATAGC 1917927 Query 5965 GTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGC 6024 | | | | | || || || ||||| ||||||||||| ||||| ||||| Sbjct 1917926 CGCAAAAGTATGAATAGTCGCACCAGAAATGATATTGTTTCCATAAAGTAGGGATCCAAA 1917867 Query 6025 GACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAA 6084 || || || | || || || | || ||||| || ||| | | || || | ||||| Sbjct 1917866 AACAGGCTCGTGAATACCATCATTATCCACTGGAGGGGCAACGATAAAAGCGATAATAAA 1917807 Query 6085 TGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAAC 6130 | || ||||| |||||| | || ||||| || ||||||||| Sbjct 1917806 TACAAAAGTTGTGGTTAACACAATAGGAATCATCAAAACACCAAAC 1917761 Score = 98.7 bits (108), Expect = 3e-16 Identities = 182/266 (68%), Gaps = 1/266 (0%) Strand=Plus/Minus Query 5912 CATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAG 5971 |||||||| | | | | |||||||| || ||||| || || || || || || |||| Sbjct 33213741 CATTCATCAACAGAGTC-GCTTCCCATATAGGATAAAAATGCAAACCTATAGCCGTGGAA 33213683 Query 5972 CTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGT 6031 | || | || || || || ||||| || |||||||| |||| ||||| | ||| Sbjct 33213682 GTAGGAATAATTGCACCAGAAATGATATTATTTCCATAAAGTAAGGATCCAAAATCAGGT 33213623 Query 6032 TCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTA 6091 ||||| || || || || || | ||| || ||| | | || || | |||||| ||| | Sbjct 33213622 TCACGAATACCATCAATATCTAATGGAGGAGCAACAATAAAAGCGATAATAAATACAGAA 33213563 Query 6092 GTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTG 6151 ||||| || || | | | ||||| || ||||||||||| | | || || || || Sbjct 33213562 GTTGCAGTCAATAAAGTAAGAATCATCAAAACACCAAACCATCTTATGTAAAGACGATTT 33213503 Query 6152 TTGGTGCTAGTAACCCAGTCACAGAA 6177 || |||| || | | ||| ||| || Sbjct 33213502 TTTATGCTGGTTATCTAGTTACAAAA 33213477 >seq7 Length=51758522 Score = 140 bits (154), Expect = 1e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 5636 AACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCA 5695 || ||||||||||| ||||| || || ||||| ||||| | |||||| || ||||||||| Sbjct 47750343 AATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAGTACCA 47750284 Query 5696 GAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAAT 5755 || || || | |||||||||||| || ||||| || || | ||| || | || || Sbjct 47750283 GAAATTCCTAAAGGCATACCATCCGAAAAGCTTCCTTGACCAATAGGATAGATCAAGAAA 47750224 Query 5756 ACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCC 5814 || | ||||| | || ||||| || ||||||||||| || |||||| || ||||| || Sbjct 47750223 ACAGCAGTAG-CGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACC 47750165 Query 5815 TAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTA 5850 | | |||||||||| |||| || |||| ||| Sbjct 47750164 CAGACGAAAACTAAGTTCTCATTCACGACCCATGTA 47750129 >seq8 Length=59662532 Score = 89.7 bits (98), Expect = 2e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 5192 GCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGG 5251 || |||||||| || ||||| || |||||||| ||||| ||||| ||||||||||||||| Sbjct 31293358 GCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATGACTTCCATACCAAGG 31293299 Query 5252 TTGGCACGGTTCAGGACATCTGCCCAAGT 5280 || || ||||| | | ||| ||||| || Sbjct 31293298 TTAGCTCGGTTAATAATATCAGCCCAGGT 31293270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152648316598488