Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq6 212 7e-50 seq9 150 2e-31 seq2 141 1e-28 seq1 134 2e-26 seq7 122 1e-22 seq8 107 2e-18 >seq6 Length=31977256 Score = 212 bits (234), Expect = 7e-50 Identities = 421/617 (68%), Gaps = 20/617 (3%) Strand=Plus/Plus Query 164988 AATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCA 165047 |||| ||||| ||||| ||||| |||| | ||||||| || |||||||| || ||| Sbjct 21888401 AATGTAATTGCATTCTCAGGTCCAATTGTTATTTTTGTTTATGTATTCCTTATTTATCCA 21888460 Query 165048 CTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGC-AATCTTTAGAT- 165105 |||||||||| |||| || || ||||| ||| | ||||| ||| || | || Sbjct 21888461 CTGGGTCAGTTTGGTTGATTCTTTGCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATC 21888520 Query 165106 -TCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGT 165164 || | || ||| ||| |||| || | ||||| | ||||| || |||||| |||| Sbjct 21888521 ATCATATTTTTC---CAAAGATTTCATACTTGGACATTAAACCCATTTCATATGCTGGGA 21888577 Query 165165 GTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAAT 165224 |||| | | ||||| | ||| | |||| ||||||||||| | || || |||| | Sbjct 21888578 GTTGTCATTGTATTGGGTGTTGCACTACTATGCGCTATTCATGGTGCAACGGTAGAAAGT 21888637 Query 165225 ACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAA 165284 || |||| || ||||| || | |||||| ||| || ||| | | || || Sbjct 21888638 ACTTTATTTGAAGATGGTGATGGTGAAAATACATTTTGTGCTTTTAACCCAACCCAACCC 21888697 Query 165285 G-AAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGC 165343 | || | || ||||| ||| | |||| || ||||| ||||| || ||||| || ||| Sbjct 21888698 GAAAAAAACCTATTCAATGATTACTGTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGT 21888757 Query 165344 GTTT-TCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTT 165402 ||| ||||| |||| ||| | ||||| || ||||||||||| || || | || | | Sbjct 21888758 TTTTCTCTAATAAGCATTGGTTACATTTATTTATGTTGTTTGTACCAGTAACTCGTTTAT 21888817 Query 165403 GGACATCCTCTATTGGCATTATTGG-TCTTGCTCTCAACCTTCGTGCTTACGATTTCGTG 165461 | | | |||| || |||| || | || | ||||| |||||||| |||||||| Sbjct 21888818 GAATGAGTGTTCTTGGGATAGTTGGTTCGTCCT-TGAACCTACGTGCTTATGATTTCGTT 21888876 Query 165462 AGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATC 165521 ||| || ||| | ||| || |||| |||| || ||||| ||||| || Sbjct 21888877 TCTCAAGAAATCTGTGCAATAG----------ATTTAAGACTTTATACACTAAAAATATT 21888926 Query 165522 CTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTT 165581 | || || ||||| | ||||| ||| || || || |||| | |||||||||||| Sbjct 21888927 TTCTTAAACGAAGGTATTCGTGCATGGATGACAACTCAAAATCAGTCTCATGAAAACTTT 21888986 Query 165582 ATCTTCCCAGAAGAAGT 165598 || |||| ||||| || Sbjct 21888987 ATATTCCTTGAAGAGGT 21889003 >seq9 Length=37469608 Score = 150 bits (166), Expect = 2e-31 Identities = 356/529 (67%), Gaps = 8/529 (2%) Strand=Plus/Plus Query 162939 GTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCT 162997 ||| || || |||||||||| | | |||| | ||||| | ||| || || |||| | Sbjct 1917761 GTTTGGTGTTTTGATGATTCCTATTGTGTTAACCACAACTTT-TGTATTTATTATCGCTT 1917819 Query 162998 TCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCA 163057 | ||| ||| || || ||||| | ||| || || | ||||| || ||| || || Sbjct 1917820 TTATCGTTGCCCCTCCAGTGGATAATGATGGTATTCACGAGCCTGTTTTTGGATCCCTAC 1917879 Query 163058 TGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTC 163117 | ||||| ||||| ||||| |||||||| | ||| ||| || || | | | | Sbjct 1917880 TTTATGGAAACAATATCATTTCTGGTGCGACTATTCATACTTTTGCGGCTATAGATTTGC 1917939 Query 163118 ACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 163177 | || ||||| || ||||||| | | ||||||| || || || |||| ||||||| Sbjct 1917940 ATTTTTATCCTATATGGGAAGTGACTTTTGTTGATGAATGCCTATACAACGACGGTCCTT 1917999 Query 163178 TCCAACTCGTAGTCTTTCACTTCCTTA--TCG-GCATCTATGCATATATGGGACGTGAAT 163234 |||| | || | || ||| ||| | | | | || ||| || ||||| ||||||| Sbjct 1918000 ATGAACTAATTGTTCTACATTTC-TTACTTAGTGTAGCT-TGC-TACATGGGTCGTGAAT 1918056 Query 163235 GGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTG 163294 |||||||| | ||| || ||||||| | ||||| ||| ||||| || | |||| Sbjct 1918057 GGGAACTTAACTTTCGTTTGGGTATGCATCATTGGATTGCTGTTGCATATTCAACTCCTG 1918116 Query 163295 TTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACG 163354 |||||| | | || ||| || |||||||| | |||||||| || || || | Sbjct 1918117 ATGCAGCTGTTATTGTTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATG 1918176 Query 163355 CAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACA 163414 |||||| | || || | ||| || ||||| | ||| |||| || || ||||| | Sbjct 1918177 GAATGCCTTTAGGAATTTATGGTACTTTCAATTTTATGATTGTATTTCAGATTGAGCATA 1918236 Query 163415 ACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGG 163463 | || || ||||| | || || |||| | || ||||||| || || Sbjct 1918237 ATATTCTTATGCATCAATTTCACGTGTTAAGTGTGACTGGTGTATTTGG 1918285 >seq2 Length=49040938 Score = 141 bits (156), Expect = 1e-28 Identities = 238/341 (70%), Gaps = 15/341 (4%) Strand=Plus/Plus Query 165286 AAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGT 165345 |||| |||||||| ||||| ||| || ||||| ||||| || ||||| || |||| | Sbjct 27893024 AAGAAACTTATTCAATGGTA--TGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTT 27893081 Query 165346 TTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGA 165405 |||| || | ||||| || ||||| ||||| || || || ||| | |||| Sbjct 27893082 TTTCCAATTA----------CATTTCTTTATGTTATTTGTACCAGTAATTGGTTTATGGA 27893131 Query 165406 CATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTT-CGTGCTTACGATTTCGTGAGT 165464 || || | || | ||| || || ||||| |||||||| |||||||| | Sbjct 27893132 TGAGTGCTCTTAGGATAGTCGGTTAGGC-CTTGACCTTACGTGCTTATGATTTCGTTTCT 27893190 Query 165465 CAGGAGATCA-GAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCT 165523 || || || | ||||| |||||||| |||||||| | || ||||||||||| || || Sbjct 27893191 CAAGAAATTTTGCGCAGCGGAAGATCCTGAATTTGATATTTTATACACCAAAAATATTCT 27893250 Query 165524 ATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTAT 165583 || || ||||| | |||| ||| | ||| || ||||| | ||||||||| |||| Sbjct 27893251 CTTAAACGAAGGTATTCGTGTGTGGATTGCAGCTCAAGATCAGCTTCATGAAAACCTTAT 27893310 Query 165584 CTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 ||||| || || || | || | || ||||| ||||||| Sbjct 27893311 ATTCCCTGAGGAGGTTCTACCACGTGGTAACGCTCTTTAAT 27893351 >seq1 Length=52205531 Score = 134 bits (148), Expect = 2e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 165315 CGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTC 165374 ||||| ||||| || ||||| || |||| ||||| || || || ||| | ||||| || Sbjct 38350081 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 38350140 Query 165375 ATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCT 165434 ||||| ||||| || || | ||| | |||| || |||| | | ||| | || Sbjct 38350141 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCC 38350200 Query 165435 CTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAA 165494 || ||| | |||||||| |||||||| ||| || ||| | ||||| |||||||| ||| Sbjct 38350201 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 38350260 Query 165495 TTTGAGACCTTCTACACCAAAAACATCCTATT 165526 |||||||| |||||||||||||| || || || Sbjct 38350261 TTTGAGACTTTCTACACCAAAAATATTCTCTT 38350292 >seq7 Length=51758522 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 163219 TATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTA 163278 || ||||| |||||||| |||||| | ||| | |||||||| || ||||| ||| Sbjct 47750129 TACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTT 47750188 Query 163279 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 163338 ||||| || || ||||||||||| || | || || ||| || |||||||| | |||||| Sbjct 47750189 GCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAA 47750248 Query 163339 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTC 163398 || || || || | ||||| | || || ||||| || ||||| | ||| |||| Sbjct 47750249 GGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGTA 47750308 Query 163399 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 163433 || || || ||||| || || || ||||| || || Sbjct 47750309 TTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq8 Length=59662532 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 163739 GTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAG 163798 |||| || |||||||| ||| | ||||| |||| |||||||| | || || ||||| | Sbjct 31293220 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTG 31293279 Query 163799 ACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACT 163858 | | ||||||| ||| || ||||||||||| |||||||| ||||| || || || | Sbjct 31293280 ATATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAATT 31293339 Query 163859 TCCCACTCGATCTTGCTGC 163877 |||| || ||||| ||||| Sbjct 31293340 TCCCTCTAGATCTAGCTGC 31293358 Score = 105 bits (116), Expect = 8e-18 Identities = 178/258 (69%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 165297 TCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAG 165356 || ||||| ||||| || ||||| ||||| || ||||| || |||| ||| | Sbjct 1232871 TCAATGGTTACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTCAT------ 1232818 Query 165357 CGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATT 165416 ||| | ||||| || ||||| ||||| || || | ||| | || | || || Sbjct 1232817 ---TGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGAATGAGTGCTCTT 1232761 Query 165417 GGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGA 165476 || | | ||| | || | ||| | ||||||| |||||||| ||| || ||| | Sbjct 1232760 GGGGTGGTCGGTTTGGCCGTGAACTTATGTGCTTATGATTTCGTTTCTCAAGAAATCCGC 1232701 Query 165477 GCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGA 165536 ||||| ||| |||| ||||||||||| ||| ||| |||||| || || || || |||| Sbjct 1232700 GCAGCGGAATATCCTGAATTTGAGACTTTCAACAACAAAAATATTCTCTTAAA--AAGGT 1232643 Query 165537 CTACGTGCTTGGTTGGCA 165554 | ||||| ||| ||||| Sbjct 1232642 ATTCGTGCGTGGATGGCA 1232625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563204615595040