Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq9 221 1e-52 seq6 219 4e-52 seq7 187 3e-42 seq1 147 2e-30 seq2 141 1e-28 seq8 132 5e-26 seq11 95.1 1e-14 >seq9 Length=37469608 Score = 221 bits (244), Expect = 1e-52 Identities = 482/717 (67%), Gaps = 26/717 (4%) Strand=Plus/Plus Query 8341 TTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTT 8400 || |||| ||| || | | ||| ||||| ||||| | || || || | ||| || ||| Sbjct 1917807 TTTATTATCGCTTTTATCGTTGCCCCTCCAGTGGATAATGATGGTATTCACGAGCCTGTT 1917866 Query 8401 GCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAAC 8460 |||||| || | || || ||||| ||||| |||||||| | ||| | | | Sbjct 1917867 TTTGGATCCCTACTTTATGGAAACAATATCATTTCTGGTGCGACTATTCATACTTTTGCG 1917926 Query 8461 GCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTAC 8520 || || | | || || || || || ||||||| ||| | ||||||| || || ||| Sbjct 1917927 GCTATAGATTTGCATTTTTATCCTATATGGGAAGTGACTTTTGTTGATGAATGCCTATAC 1917986 Query 8521 AACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCT-TTGCTTATAT 8579 |||| |||||||| | || | ||| | || ||| | ||| | || ||||| | || Sbjct 1917987 AACGACGGTCCTTATGAACTAATTGTTCTACATTTCTTACTTAGTGTAGCTTGCT-ACAT 1918045 Query 8580 GGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATA 8639 ||||||||||||||||||| | || | || |||| || |||||| ||||||||| Sbjct 1918046 GGGTCGTGAATGGGAACTTAACTTTCGTTTGGGTATGCATCATTGGATTGCTGTTGCATA 1918105 Query 8640 CTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTC 8699 || |||||| ||| |||| | || ||| ||| | |||||||| |||||||||| Sbjct 1918106 TTCAACTCCTGATGCAGCTGTTATTGTTGTTTTCTTGATCTATCCTATTGGTCAAGGAAG 1918165 Query 8700 GTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCA 8759 || || ||||| |||||| | || || | ||||| ||||| | |||| |||| || || Sbjct 1918166 CTTTTCGGATGGAATGCCTTTAGGAATTTATGGTACTTTCAATTTTATGATTGTATTTCA 1918225 Query 8760 GGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGG 8819 | |||||| || || || ||||| | || ||| || | |||| ||||||| || || Sbjct 1918226 GATTGAGCATAATATTCTTATGCATCAATTTCACGTGTTAAGTGTGACTGGTGTATTTGG 1918285 Query 8820 CGGATCTCTCTTTTC--CGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAG 8877 | | ||| || ||| || || ||| ||| | || |||| Sbjct 1918286 C--AACTCCCTATTCAGTGCTATAAATGATTCCTTAGTAACTT----------------- 1918326 Query 8878 ACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTAC 8937 | ||| || || ||| || | || ||||| || |||||| | || ||| || Sbjct 1918327 TCTACCTTAA-TGAATCTGCTAATGAAGGTTACAAATTTGGTCAAAAGGACAAAATCTAT 1918385 Query 8938 AACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAAC 8997 | ||| | || ||||||| || |||| | |||||||| ||||||||| ||| || Sbjct 1918386 GATATTATAGCTGCTCATGATTATTTTGTCGGATTGATCTTTCAATATGCAAGTTTCAAT 1918445 Query 8998 AATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTT 9054 |||||| | || |||| ||||| | || ||| |||| | || || |||||| Sbjct 1918446 AATTCTCG-TTTTTTAATTTTTTCCTAGTTGTTTGG-CTGTAATAGGTATTTGGTTT 1918500 >seq6 Length=31977256 Score = 219 bits (242), Expect = 4e-52 Identities = 479/713 (67%), Gaps = 17/713 (2%) Strand=Plus/Plus Query 10103 TGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTT 10162 ||| ||||||| | ||||| || || || | ||||| | | ||||||| || | | Sbjct 21888305 TGGACTTTTGTTGTTCTCCATGGTGCTTTTGGATTAATACGTTCCATGTTACATCAATCT 21888364 Query 10163 GAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCT---ATCGCGTTTTCTGGGCCT 10219 || || || ||| || | | | |||||| ||| | || || || || || || Sbjct 21888365 GAACTTGCTCAATTTTTTCAATTACAACCTTATAATAATGTAATTGCATTCTCAGGTCCA 21888424 Query 10220 ATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTT 10279 |||| | ||||||| ||| ||||| || |||||||| || |||| | |||| |||||| Sbjct 21888425 ATTGTTATTTTTGTTTATGTATTCCTTATTTATCCACTGGGTCAGTTTGGTTGATTCTTT 21888484 Query 10280 GCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCAT 10339 || || ||||| | || || | ||| | || | | || |||| | |||||| Sbjct 21888485 GCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATCATCATATTTTTCCAAAGATTTCAT 21888544 Query 10340 AATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTC 10399 | |||||| | || || || |||||| ||||||||| | || |||| | || || Sbjct 21888545 ACTTGGACATTAAACCCATTTCATATGCTGGGAGTTGTCATTGTATTGGGTGTTGCACTA 21888604 Query 10400 CTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCA 10459 |||| || || || || | || ||||||| || | | | ||||||| || | | Sbjct 21888605 CTATGCGCTATTCATGGTGCAACGGTAGAAAGTACTTTATTTGAAGATGGTGATGGTGAA 21888664 Query 10460 AACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGA-CCTATTCGATGGTTACTGC 10518 || || || |||||| | || ||| ||| | | ||||||| ||| |||||| Sbjct 21888665 AATACATTTTGTGCTTTTAACCCAACCCAACCCGAAAAAAACCTATTCAATGATTACTGT 21888724 Query 10519 TAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGC-AATAAACGCTGGCTTCATT 10577 ||| || || |||||||| || ||||| ||| |||| | ||||| | ||| | |||| Sbjct 21888725 TAATCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTCTCTAATAAGCATTGGTTACATT 21888784 Query 10578 TCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGT- 10636 | |||||| |||||||||| || | || | || | | | |||| || ||||| Sbjct 21888785 TATTTATGTTGTTTGTACCAGTAACTCGTTTATGAATGAGTGTTCTTGGGATAGTTGGTT 21888844 Query 10637 CTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGAT 10696 | | || | || || |||||||| ||||| || |||||||| ||| | || ||| Sbjct 21888845 CGTCCT-TGAACCTACGTGCTTATGATTTCGTTTCTCAAGAAATCTGTGCAATAGA---- 21888899 Query 10697 CCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGG 10756 ||| |||| || || || || ||||| | | ||||||||| ||||||||||| Sbjct 21888900 ------TTTAAGACTTTATACACTAAAAATATTTTCTTAAACGAAGGTATTCGTGCATGG 21888953 Query 10757 ATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCT 10809 ||| || | | || | || |||| |||| | |||| ||||| ||||| Sbjct 21888954 ATGACAACTCAAAATCAGTCTCATGAAAACTTTATATTCCTTGAAGAGGTTCT 21889006 >seq7 Length=51758522 Score = 187 bits (206), Expect = 3e-42 Identities = 174/220 (79%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 8570 TTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCT 8629 ||||| | |||||||||||||| |||||| || || || || |||||||||||||| Sbjct 47750125 TTGCT-ACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTG 47750183 Query 8630 GTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTG 8689 ||||||||| || ||||||||||| || ||| ||||||| ||| | |||||||| ||| Sbjct 47750184 CTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTG 47750243 Query 8690 GTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGC 8749 ||||||| || || |||||||||||| | || || || ||||| ||||| | |||| Sbjct 47750244 GTCAAGGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGA 47750303 Query 8750 TTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTT 8789 |||| || ||||||||||| || || || ||||| || || Sbjct 47750304 TTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq1 Length=52205531 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 10523 CGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTT 10582 || || |||||||| || ||||| |||||||| ||||||||| ||| | ||||||||| Sbjct 38350081 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 38350140 Query 10583 ATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCT 10642 ||| | |||||||| || | ||| | |||| | || |||| | | ||| | || Sbjct 38350141 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCC 38350200 Query 10643 CTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAA 10702 || || | |||||||| ||||| || |||||||| ||| | || | |||||||||||| Sbjct 38350201 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 38350260 Query 10703 TTTGAGACGTTCTATACGAAGAATATCCT 10731 |||||||| ||||| || || ||||| || Sbjct 38350261 TTTGAGACTTTCTACACCAAAAATATTCT 38350289 >seq2 Length=49040938 Score = 141 bits (156), Expect = 1e-28 Identities = 235/336 (70%), Gaps = 15/336 (4%) Strand=Plus/Plus Query 10494 AAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTT 10553 |||| || ||||| ||||| |||||| || || |||||||| || ||||| |||||| Sbjct 27893024 AAGAAACTTATTCAATGGTA--TGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTT 27893081 Query 10554 TTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGA 10613 || |||| | |||||||||||| | |||||||| || || ||| | |||| Sbjct 27893082 TTTCCAATTA----------CATTTCTTTATGTTATTTGTACCAGTAATTGGTTTATGGA 27893131 Query 10614 CCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTT-CGTGCTTACGATTTTGTATCT 10672 | || || | || | ||| || || | ||| |||||||| ||||| || ||| Sbjct 27893132 TGAGTGCTCTTAGGATAGTCGGTTAGGC-CTTGACCTTACGTGCTTATGATTTCGTTTCT 27893190 Query 10673 CAAGAGATCAGG-GCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCT 10731 ||||| || | || | ||||||||||||||||| | || || || || ||||| || Sbjct 27893191 CAAGAAATTTTGCGCAGCGGAAGATCCTGAATTTGATATTTTATACACCAAAAATATTCT 27893250 Query 10732 TCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGT 10791 | ||||||||| |||||| ||||| ||| | || || | || |||| | || | Sbjct 27893251 CTTAAACGAAGGTATTCGTGTGTGGATTGCAGCTCAAGATCAGCTTCATGAAAACCTTAT 27893310 Query 10792 TTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACT 10827 ||||| || || ||||| || | ||||| || || Sbjct 27893311 ATTCCCTGAGGAGGTTCTACCACGTGGTAACGCTCT 27893346 >seq8 Length=59662532 Score = 132 bits (146), Expect = 5e-26 Identities = 186/258 (72%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 10505 TCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAA 10564 || |||||||||||||| || || |||||||| || ||||| |||||||| || Sbjct 1232871 TCAATGGTTACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTC---AT--- 1232818 Query 10565 CGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATT 10624 ||| | |||||||||||| | |||||||| || | ||| | || | | || || Sbjct 1232817 ---TGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGAATGAGTGCTCTT 1232761 Query 10625 GGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGG 10684 || | | ||| | || | || | ||||||| ||||| || |||||||| ||| | Sbjct 1232760 GGGGTGGTCGGTTTGGCCGTGAACTTATGTGCTTATGATTTCGTTTCTCAAGAAATCCGC 1232701 Query 10685 GCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGT 10744 || | ||| |||||||||||||||| ||| | | || ||||| | ||| || ||||| Sbjct 1232700 GCAGCGGAATATCCTGAATTTGAGACTTTCAACAACAAAAATATTC-TCTTAA-AAAGGT 1232643 Query 10745 CTTCGTGCATGGATGGCA 10762 ||||||| ||||||||| Sbjct 1232642 ATTCGTGCGTGGATGGCA 1232625 >seq11 Length=50367376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 10502 TATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAAT 10561 ||||| ||||||||| |||| || || |||||||| || ||||| |||||||| |||| Sbjct 3718489 TATTCAATGGTTACTCCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAAT 3718548 Query 10562 AAACGCTGGCTTCATTTCTTTATGCTGTTTGTACC 10596 |||| ||| | |||||||||||| | |||||||| Sbjct 3718549 AAACATTGGTTACATTTCTTTATGTTATTTGTACC 3718583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516475429152000