Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 >seq3 Length=52284309 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || |||||||||||| || ||| |||| Sbjct 30284228 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACCATTACCTTGGAGGTGGAGAGTTCA 30284287 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || || | || || || ||||| | ||| ||| || Sbjct 30284288 GACACCATTGATAATGTGAAAGCCAAGATTCAG-GATAAGGAGGGTATTCCCCCAGACCA 30284346 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||||||||| || ||||| | |||||| | ||| | || |||||||| Sbjct 30284347 GCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTATAA 30284406 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 || || |||||||||||||||||| |||| || || Sbjct 30284407 TATCCAGAAAGAATCTACTCTGCACTTGGTTTTGAG 30284442 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || ||||| || || ||||| ||| || ||| |||| Sbjct 30274585 ATGCAAATTTTTGTGAAGACTTTAACTGGAAAGACCATAACCTTGGAGGTGGAGAGTTCA 30274644 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || || ||||| ||||| | || ||||| Sbjct 30274645 GATACCATTGATAATGTCAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCGGATCAG 30274704 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||| ||||| || ||||| | ||||| || ||| | || ||||||||| Sbjct 30274705 CAGAGGCTTATTTTTGCTGGTAAACAGCTTGAAGACGGTAGAACCCTTGCGGATTATAAC 30274764 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 || || || ||||| ||||||||| |||| || || Sbjct 30274765 ATCCAGAAGGAATCCACTCTGCACTTGGTTTTGAG 30274799 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || |||||||||||| || ||| |||| Sbjct 30378408 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACCATTACCTTGGAGGTGGAGAGTTCA 30378467 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || || | || ||||| ||||| | ||| ||| || Sbjct 30378468 GATACCATTGATAATGTGAAAGCCAAGATTCAG-GACAAGGAGGGTATTCCCCCAGACCA 30378526 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||||||||| || ||||| | |||||| | ||| |||| |||||||| Sbjct 30378527 GCAGAGGCTTATCTTTGCTGGGAAACAGCTTGAAGATGGAAGAACCCTGGCGGATTATAA 30378586 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||||| || || || ||| ||||| | || || || Sbjct 30378587 TATTCAGAAGGAGTCCACTTTGCACTTAGTTTTGAG 30378622 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| |||||||| || || || || || |||||||| || ||| ||| Sbjct 30284455 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAGGTTGAAAGTTC 30284514 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| ||| || ||||| || || | || |||||| Sbjct 30284515 TGACACCATCGATAATGTGAAGGCAAAGATTCAGGACAAGGAAGGCATACCACCAGATCA 30284574 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| ||||||||||| || || || |||||||| || | || |||||||| Sbjct 30284575 ACAGAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCTGATTATAA 30284634 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||| || || ||||| ||||||||| |||| || || Sbjct 30284635 CATCCAGAAGGAATCCACTCTGCACCTGGTGTTGAG 30284670 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || ||||| || || ||||| ||| || ||| |||| Sbjct 30309787 ATGCAGATTTTTGTGAAGACTTTAACTGGAAAGACCATAACCTTGGAGGTGGAGAGTTCA 30309846 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || || ||| ||||| ||||| | || ||||| Sbjct 30309847 GATACCATTGATAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAG 30309906 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||| ||||| || ||||| | ||||| || ||| | || ||||||||| Sbjct 30309907 CAGAGGCTTATTTTTGCTGGTAAACAGCTTGAAGACGGTAGAACCCTTGCGGATTATAAC 30309966 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 || || || ||||| ||||||||| |||| || || Sbjct 30309967 ATCCAGAAGGAATCCACTCTGCACTTGGTTTTGAG 30310001 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||||||||| || || | || || || ||||||||| || |||| || Sbjct 30378863 AATGCAAATATTTGTGAAGACTCTGACAGGAAAGACCATTACCTTGGAGGTGGAAAGCTC 30378922 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | | || | || ||||| | || ||||| || || | || ||||| Sbjct 30378923 TGATACAATTGACAATGTGAAAGCAAAGATTCAG-GACAAGGAAGGCATACCACCAGATC 30378981 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 ||||||| ||||||||||| || || || |||||||| || | || ||||||| Sbjct 30378982 AACAGAGGCTTATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGTACCCTTGCTGATTATA 30379041 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | || || || ||||| ||||| ||| |||| || || | || || || || Sbjct 30379042 ATATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGACTTCGTGGTGGTAT 30379093 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || ||||| || || || || ||||| ||| ||| ||| | || Sbjct 30274129 ATGCAGATATTCGTGAAAACTTTGACTGGCAAGACCATAACCCTCGAGGTAGAATCGTCT 30274188 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| || ||| ||||||||||| | || |||||| Sbjct 30274189 GACACCATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCTCCAGATCAG 30274248 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || ||||| || |||||| | || ||| | ||| | ||||||||||| Sbjct 30274249 CAGAGGCTGATTTTTGCTGGTAAACAACTTGAGGATGGAAGAACCCTTGCCGATTATAAT 30274308 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || || || || || ||| |||| Sbjct 30274309 ATTCAGAAGGAGTCCACCCTCCACCTGGT 30274337 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| |||||||| || || | || || || ||||||||| || ||| || Sbjct 30310242 AATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTGGAGAGCTC 30310301 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | || ||||| | || ||||| ||||| | || ||||| Sbjct 30310302 TGATACAATTGATAATGTGAAAGCAAAGATTCAG-GACAAGGAGGGCATTCCACCAGATC 30310360 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||||| ||||| ||||| || ||||||||||||||| | || |||| || || | Sbjct 30310361 AGCAGAGGCTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACA 30310420 Query 28732 ACATTCAAAAAGAATCTACTCTGCAC 28757 ||||||| |||||||| || || ||| Sbjct 30310421 ACATTCAGAAAGAATCCACCCTCCAC 30310446 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || ||||| ||||||||||| || ||| ||| Sbjct 30378636 ATGCAAATTTTTGTCAAGACCTTGACGGGAAAAACCATTACTTTGGAGGTTGAAAGTTCC 30378695 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||| || ||||||||||| | || ||| || Sbjct 30378696 GATACCATTGATAATGTAAAGGCAAAGATACAGGACAAAGAGGGGATTCCACCAGACCAG 30378755 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || ||||||||||| || || || |||||||| || | || ||||||||| Sbjct 30378756 CAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCTGATTATAAC 30378815 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 || || || ||||| ||||| || |||| || || Sbjct 30378816 ATCCAGAAGGAATCCACTCTTCATTTGGTGTTGAG 30378850 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || ||||| || || || || ||||| ||| ||| ||| | || Sbjct 30309559 ATGCAGATATTCGTGAAAACTTTGACTGGCAAGACCATAACCCTCGAGGTAGAATCGTCT 30309618 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| || ||| ||||||||||| | || ||||| Sbjct 30309619 GACACTATTGATAATGTCAAAGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAG 30309678 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || ||||| || |||||| | || ||| | ||| | || |||||||| Sbjct 30309679 CAGAGGCTGATTTTTGCTGGTAAACAACTTGAGGATGGAAGAACCCTTGCAGATTATAAT 30309738 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || || || || || ||| |||| | | ||| |||| || || Sbjct 30309739 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTTTAAGAGGTGGCAT 30309788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425401129288332