Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq9 206 3e-48 seq6 185 1e-41 seq7 163 3e-35 seq1 125 8e-24 seq2 123 3e-23 seq8 107 2e-18 >seq9 Length=37469608 Score = 206 bits (228), Expect = 3e-48 Identities = 407/596 (68%), Gaps = 6/596 (1%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 |||| ||||||| | ||||||| ||| || | ||||| | | | ||| || || || Sbjct 1917714 TTTTATAACTGGATAACCAGCATCGAAAATCTTCTTTACATATGATTGTTTGGTGTTTTG 1917773 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 |||||||| || | | | || ||||| || || || || || | | ||| || Sbjct 1917774 ATGATTCCTATTGTGTTAACCACAACT-TTTGTATTTATTATCGCTTTTATCGTTGCCCC 1917832 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || ||||| | || || |||| || || || ||| || || | ||||||||||| Sbjct 1917833 TCCAGTGGATAATGATGGTATTCACGAGCCTGTTTTTGGATCCCTACTTTATGGAAACAA 1917892 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 ||||| |||||||| ||| | | ||| | ||||| | | |||| || || || || Sbjct 1917893 TATCATTTCTGGTGCGACTATTCATACTTTTGCGGCTATAGATTTGCATTTTTATCCTAT 1917952 Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 161174 ||||||| | | | || ||||| || ||||||| ||||||| |||| |||| Sbjct 1917953 ATGGGAAGTGACTTTTGTTGATGAATGCCTATACAACGACGGTCCTTATGAACTAATTGT 1918012 Query 161175 GTTCCACTTCCTGATTGGCAT--CTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 161232 | || ||| | || | | || |||| ||||||||||||| ||||||||| | Sbjct 1918013 TCTACATTTCTTACTTAGTGTAGCT-TGCT-ACATGGGTCGTGAATGGGAACTTAACTTT 1918070 Query 161233 CGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 161292 ||| |||| |||| || ||||||| || ||||| || |||||| || || | | | Sbjct 1918071 CGTTTGGGTATGCATCATTGGATTGCTGTTGCATATTCAACTCCTGATGCAGCTGTTATT 1918130 Query 161293 GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGC 161352 | || ||| || |||||||| | |||||||| || || |||| ||||||| | || Sbjct 1918131 GTTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGAATGCCTTTAGGA 1918190 Query 161353 ATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCAC 161412 || | |||||| ||||| | ||| |||| || || ||||| || ||||| ||||| Sbjct 1918191 ATTTATGGTACTTTCAATTTTATGATTGTATTTCAGATTGAGCATAATATTCTTATGCAT 1918250 Query 161413 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAAT 161468 | || || || | | || | ||||| |||||| || || |||||||| || Sbjct 1918251 CAATTTCACGTGTTAAGTGTGACTGGTGTATTTGGCAACTCCCTATTCAGTGCTAT 1918306 Score = 107 bits (118), Expect = 2e-18 Identities = 177/250 (71%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 |||||||||| | | ||||||| | || || ||||| | | ||||| || || || Sbjct 33213477 TTTTGTAACTAGATAACCAGCATAAAAAATCGTCTTTACATAAGATGGTTTGGTGTTTTG 33213536 Query 160936 ATGATTCCCTGCTTGCTCG-CTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTC 160993 ||||||| | ||| | | |||| || | ||| || || || || || ||| ||||| Sbjct 33213537 ATGATTCT-TACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATTGTTGCTC 33213594 Query 160994 CCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 161053 | || | || || || || ||||||||||| | ||| || | | |||||||| | Sbjct 33213595 CTCCATTAGATATTGATGGTATTCGTGAACCTGATTTTGGATCCTTACTTTATGGAAATA 33213654 Query 161054 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 161113 | ||||| |||||||| |||| ||| |||| | ||||| ||| |||| || || || | Sbjct 33213655 ATATCATTTCTGGTGCAATTATTCCTACTTCCACGGCTATAGGTTTGCATTTTTATCCTA 33213714 Query 161114 TCTGGGAAGC 161123 | |||||||| Sbjct 33213715 TATGGGAAGC 33213724 >seq6 Length=31977256 Score = 185 bits (204), Expect = 1e-41 Identities = 473/712 (66%), Gaps = 21/712 (3%) Strand=Plus/Plus Query 162405 TGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTT 162464 ||||||||||| | ||||| || || |||| | | ||| ||| |||| | | || | | Sbjct 21888305 TGGACTTTTGTTGTTCTCCATGGTGCTTTTGGATTAATACGTTCCATGTTACATCAATCT 21888364 Query 162465 GAACTGGCACGACTTATCGGTATTCGTCCTTACAATGCT---ATTGCTTTCTCAGGTCCT 162521 ||||| || | | || | | | ||||| ||| | ||||| ||||||||||| Sbjct 21888365 GAACTTGCTCAATTTTTTCAATTACAACCTTATAATAATGTAATTGCATTCTCAGGTCCA 21888424 Query 162522 ATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTC 162581 |||| | | || ||| ||| || ||||| ||||| |||| || | || ||||| Sbjct 21888425 ATTGTTATTTTTGTTTATGTATTCCTTATTTATCCACTGGGTCAGTTTGGTTGATTCTTT 21888484 Query 162582 GCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCAT 162641 || || || | ||||| | || | | || | | || ||||| | || ||| Sbjct 21888485 GCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATCATCATATTTTTCCAAAGATTTCAT 21888544 Query 162642 AACTGGACGCTAAATCCTTTTCACATGATGGGCGTAG-CAG-GTATCCTTGGTGGTGCAT 162699 | ||||| |||| || ||||| ||| |||| || | || |||| | |||| |||| Sbjct 21888545 ACTTGGACATTAAACCCATTTCATATGCTGGGAGTTGTCATTGTAT--TGGGTGTTGCAC 21888602 Query 162700 TGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAG 162759 | || | ||||||||||| | || || |||| ||| | | |||||||| || | Sbjct 21888603 TACTATGCGCTATTCATGGTGCAACGGTAGAAAGTACTTTATTTGAAGATGGTGATGGTG 21888662 Query 162760 CAAACACTTTTAAAGCATTTGACTCCACAC-AGGAGGAAGAAACGTATTCGATGGTTACT 162818 ||| || ||| || ||| || | || | | | || |||| ||||| ||| ||||| Sbjct 21888663 AAAATACATTTTGTGCTTTTAACCCAACCCAACCCGAAAAAAACCTATTCAATGATTACT 21888722 Query 162819 GCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTT-AGTAACAAGCGTTGGTTGCA 162877 | || ||||| ||||| || || || || ||| |||| ||| |||| |||||| || Sbjct 21888723 GTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTCTCTAATAAGCATTGGTTACA 21888782 Query 162878 TTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGG 162937 ||| |||||| | ||||| || || | || | || | ||| | | || || |||| Sbjct 21888783 TTTATTTATGTTGTTTGTACCAGTAACTCGTTTATGAATGAGTGTTCTTGGGATAGTTGG 21888842 Query 162938 ACTCG-CTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAG 162996 ||| | | || || |||||||| || || || ||||||||| | |||| ||| Sbjct 21888843 -TTCGTCCTTGAACCTACGTGCTTATGATTTCGTTTCTCAAGAAATCTGTGCAATAGA-- 21888899 Query 162997 ACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCAT 163056 ||| |||| || || || || || ||| | | || ||||| |||| |||| Sbjct 21888900 --------TTTAAGACTTTATACACTAAAAATATTTTCTTAAACGAAGGTATTCGTGCAT 21888951 Query 163057 GGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGT 163108 || | || | | || ||||||| |||||| | |||| ||||||||| Sbjct 21888952 GGATGACAACTCAAAATCAGTCTCATGAAAACTTTATATTCCTTGAAGAGGT 21889003 >seq7 Length=51758522 Score = 163 bits (180), Expect = 3e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 161203 TACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTA 161262 |||||||||||||| || |||||| || |||||||| ||||||||||||||| || Sbjct 47750129 TACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTT 47750188 Query 161263 GCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAA 161322 ||||| || |||||||| || || || | ||| || ||| || |||||||| | |||||| Sbjct 47750189 GCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAA 47750248 Query 161323 GGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTC 161382 || || || |||| |||||| | || || |||||||| ||||| | ||| |||| Sbjct 47750249 GGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGTA 47750308 Query 161383 TTCCAAGCAGAGCACAACATTCTCATGCACCCCTT 161417 || || || ||||| || ||||| ||||| || || Sbjct 47750309 TTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq1 Length=52205531 Score = 125 bits (138), Expect = 8e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 162825 CGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTT 162884 ||||| ||||| || || || || |||||||| || || |||||||| ||||||||| Sbjct 38350081 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 38350140 Query 162885 ATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCT 162944 ||| | ||||| || || | ||| | |||| ||| || | || | | || | || Sbjct 38350141 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCC 38350200 Query 162945 CTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAG 163004 || || | |||||||| || || || ||||||||| | || || || ||||| ||||| Sbjct 38350201 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 38350260 Query 163005 TTTGAGACGTTCTATACAAAGAACATTCT 163033 |||||||| ||||| || || || ||||| Sbjct 38350261 TTTGAGACTTTCTACACCAAAAATATTCT 38350289 >seq2 Length=49040938 Score = 123 bits (136), Expect = 3e-23 Identities = 231/336 (69%), Gaps = 15/336 (4%) Strand=Plus/Plus Query 162796 AAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTT 162855 ||||||| ||||| ||||| ||| || ||||| ||||| || || || || |||||| Sbjct 27893024 AAGAAACTTATTCAATGGTA--TGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTT 27893081 Query 162856 TTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGA 162915 || || || |||||||||||| | ||||| || || || ||| | |||| Sbjct 27893082 TTTCCAA----------TTACATTTCTTTATGTTATTTGTACCAGTAATTGGTTTATGGA 27893131 Query 162916 CAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTT-CGTGCTTACGACTTTGTATCT 162974 ||| || | | | || | | | | || | ||| |||||||| || || || ||| Sbjct 27893132 TGAGTGCTCTTAGGA-TAGTCGGTTAGGCCTTGACCTTACGTGCTTATGATTTCGTTTCT 27893190 Query 162975 CAAG-AAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCT 163033 |||| || || | || || ||||| ||||| ||||| | || || || || || ||||| Sbjct 27893191 CAAGAAATTTTGCGCAGCGGAAGATCCTGAATTTGATATTTTATACACCAAAAATATTCT 27893250 Query 163034 TCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGT 163093 | || ||||| |||| | ||| | ||| | || || | |||||| ||| || | Sbjct 27893251 CTTAAACGAAGGTATTCGTGTGTGGATTGCAGCTCAAGATCAGCTTCATGAAAACCTTAT 27893310 Query 163094 GTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 |||||||| ||||| | ||| | || |||||||| Sbjct 27893311 ATTCCCTGAGGAGGTTCTACCACGTGGTAACGCTCT 27893346 >seq8 Length=59662532 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 161723 GTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAG 161782 |||| || |||||||| || | ||||||||||| ||| || || || |||||||| | Sbjct 31293220 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTG 31293279 Query 161783 ACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACT 161842 | || | ||||| ||| ||||| |||||||| ||||| || || |||||||| || | Sbjct 31293280 ATATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAATT 31293339 Query 161843 TCCCTCTTGACCTTGCTGC 161861 ||||||| || || ||||| Sbjct 31293340 TCCCTCTAGATCTAGCTGC 31293358 Score = 102 bits (112), Expect = 9e-17 Identities = 178/258 (69%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 162807 TCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAG 162866 || ||||||||||| || ||||| ||||| || || || || |||||||| Sbjct 1232871 TCAATGGTTACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTT--------- 1232821 Query 162867 CGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATC 162926 | |||||| |||||||||||| | ||||| || || | ||| | || | ||| || | Sbjct 1232820 CATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGAATGAGTGCTCTT 1232761 Query 162927 GGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGT 162986 || | | || | || | || | ||||||| || || || ||||||||| | || Sbjct 1232760 GGGGTGGTCGGTTTGGCCGTGAACTTATGTGCTTATGATTTCGTTTCTCAAGAAATCCGC 1232701 Query 162987 GCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGA 163046 || || ||| | ||||| |||||||| ||| | | || || |||| ||| || |||| Sbjct 1232700 GCAGCGGAATATCCTGAATTTGAGACTTTCAACAACAAAAATATTC-TCTTAA-AAAGGT 1232643 Query 163047 CTTCGAGCATGGTTAGCA 163064 |||| || ||| | ||| Sbjct 1232642 ATTCGTGCGTGGATGGCA 1232625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547742352437280