Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq2 107 2e-18 seq8 104 3e-17 seq9 102 1e-16 >seq1 Length=52205531 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 ||||||||||||||| | |||| || || || || ||||| |||||||||||||| Sbjct 19482751 TCCTTCGCCGAGCGCATCGTTGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGAAGC 19482692 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 || ||| |||| | ||| | |||||||| || |||||||| || || |||||| || Sbjct 19482691 TTTTGCTCTATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGACTTACCTTCTCCAAC 19482632 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||||| || ||||| || ||||| |||||| Sbjct 19482631 GAACTCATCTCCCGCGACGAGGGGCTCCAC 19482602 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||| |||||||||||| | | || || || || || ||||| ||||||||||| || Sbjct 45626836 CTCTTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCTGGCAG 45626895 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| | || | ||| | |||||||| ||| | ||||| || || |||||| || Sbjct 45626896 CTTCTGCTCGATATTCTGGCTCAAGAAGCGCGGTTTGATGCCCGGTCTCACCTTCTCCAA 45626955 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||||| || || |||||||| || || ||| Sbjct 45626956 CGAACTCATATCGCGAGATGAAGGGCTTCAC 45626986 Score = 86.0 bits (94), Expect = 7e-12 Identities = 133/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 75887 ATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAAC 75946 ||||| |||||||| | || | |||||| || || ||||||| |||||| |||| || Sbjct 38704681 ATTCTGAAATCACATAAAGAAATTGGAACCCCTTACATGCTTTT-AAGGATACTTGGAAT 38704623 Query 75947 AAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATT 76006 |||||| |||||| ||||||||| ||||| || ||||| | |||| | || Sbjct 38704622 AAGAAGC--AACCAACAGAATTTGGACACAATTAAATTATCAAACTTGTGCATTGCGATA 38704565 Query 76007 TTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCA 76066 | |||| || | ||| | ||||| |||||||||||||| || || || ||| Sbjct 38704564 ATTAAGTATTCAAGTCCAATTGAAAATGCTGTGTGCAATTTGGCATCCATTGCACTACCA 38704505 Query 76067 AAGTATGT 76074 | ||||| Sbjct 38704504 CAATATGT 38704497 >seq2 Length=49040938 Score = 107 bits (118), Expect = 2e-18 Identities = 302/460 (66%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||||| ||| | || | ||||| | || || ||| | ||||| ||||| || Sbjct 34691170 TGATGTTGCTGGGGTGGATGAAGCCAAGCAGGACTTTATGGAGGTGGTGGAGTTTCTAAA 34691229 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | | || ||||| | || ||| || || || ||| | ||||| | || Sbjct 34691230 GAAGCCTGAGAGGTTCACTGCTGTTGGGGCTCGCATACCTAAAGGAGTTCTTCTTGTTGG 34691289 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGT-CC 175369 | ||||| || ||||||||||| | ||| || || || |||||| | ||| || Sbjct 34691290 TCCTCCAGGAACTGGAAAGACCCTGTTAGCCAAGGCTATTGCTGGTGAAGCTGGTGTTCC 34691349 Query 175370 CATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAA 175429 | || | || | |||| | | ||||| ||||||||||||||||| ||||| Sbjct 34691350 CTTTTTTTCAATA-TCTGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTC 34691408 Query 175430 GGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATG 175489 | ||||| ||| | || | | ||| || ||| || || |||||||| |||||| Sbjct 34691409 GAGTTCGTGATTTGTTCAAGAAGGCCAAAGAGAATGCCCCTTGCATTGTCTTTGTTGATG 34691468 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGA 175546 | |||||||| || || | ||| | | |||| |||| || ||||| || | Sbjct 34691469 AAATTGATGCTGTTGGAAGACAAAGAGGAACTGGAATTGGT---GGAGGGAATGATGAAA 34691525 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCA 175606 |||| || || | || ||||| | || || |||||||| ||||| | | ||||| | Sbjct 34691526 GAGAGCAGACCCTGAACCAACTTTTGACAGAAATGGATGGTTTTGAGGGTAATACTGGTA 34691585 Query 175607 TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | | || ||||| || ||||| | | ||||| ||||| Sbjct 34691586 TCATTGTCATTGCAGCAACTAACAGGGCAGATATTCTTGA 34691625 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 75933 AGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATC 75992 |||| |||| |||| ||| || || ||| ||||| |||||||||||||| ||||| Sbjct 43314016 AGGACACTTGCAACAGGAAAAGCAATCAACAGAATCTGGGAACAATCAAGTCATCAAACT 43313957 Query 75993 TTTGCACGGAAATTTTAGAGTACACAGAT--AAGGATGAGACGGCTGTTTGCAATTTGGC 76050 | ||||| || || | ||||| ||| | || | || || ||||| ||||| ||||| Sbjct 43313956 TGTGCACTGAGATAATTGAGTATACAAGTCCAACG--GAAACTGCTGTGTGCAACTTGGC 43313899 Query 76051 ATCAATCGCCCTTCCAAAGTATGT 76074 |||||| || || ||| ||||| Sbjct 43313898 ATCAATTGCTCTACCACGATATGT 43313875 >seq8 Length=59662532 Score = 104 bits (114), Expect = 3e-17 Identities = 272/406 (67%), Gaps = 12/406 (3%) Strand=Plus/Plus Query 175229 AAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTG-GAAGT-GGTGCCAAGAT 175286 |||||||||| || || | ||| |||| ||||| ||||| | || || ||||| || Sbjct 3422999 AAGAGATTGTTGAGTTCTTGAAG--ACCCCAGAGAAATTTTCTGCCGTTGGAGCCAAAAT 3423056 Query 175287 CCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGC 175346 ||| ||| | ||| | | || || || || |||||||| | || ||| || Sbjct 3423057 TCCCAAAGGGGTTCTTTTGGTAGGGCCTCCGGGGACTGGAAAGACATTGCTGGCCAAGGC 3423116 Query 175347 CATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGAT 175406 || || || || | || || ||| || |||| || | || | ||||| Sbjct 3423117 AATTGCAGGAGAGGCTGGGGTTCCTTTCTTCTCCCTATCTGGATCAGAGTTCATTGAGAT 3423176 Query 175407 GTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCA 175466 |||||| ||||| || ||| |||||| | ||| | || | | ||| ||||| Sbjct 3423177 GTTTGTGGGTGTAGGGGCCTCAAGGGTGAGGGATTTGTTCAACAGGGCCAAGCAAAATTC 3423236 Query 175467 ACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGG 175526 ||| ||| | || |||||||||||||| ||||| || || | | | | | | ||| Sbjct 3423237 ACCTTGTTTGGTATTCATTGATGAGATAGATGCTGTAGGAAGGAAGAGAGGAACAGGTA- 3423295 Query 175527 TATGCC-AGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 || | || |||||| || |||||||||||| | ||||| | ||||| || ||||||| Sbjct 3423296 TAGGTGGAGGAAATGATGAAAGAGAACAAACACTGAATCAGTTGCTCACTGAAATGGATG 3423355 Query 175586 GCTTTGAC---AATGAGACTGGCATTGTGGTTATTGCGGCCACTAA 175628 | ||| || || | |||||| || | || ||||| |||||||| Sbjct 3423356 G-TTTTACTGGAA--ACACTGGCGTTATAGTCATTGCTGCCACTAA 3423398 >seq9 Length=37469608 Score = 102 bits (112), Expect = 1e-16 Identities = 209/307 (68%), Gaps = 8/307 (3%) Strand=Plus/Minus Query 175345 GCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGA 175403 || || || |||||| || ||||||||| | || | ||| | | | ||||| || Sbjct 35454857 GCTATTGCAGGTGAAGCAGGTGTCCCATTTTTTTCAAT-CTCAGGTTCTGAGTTTGTAGA 35454799 Query 175404 GATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAA 175463 ||||||||||||||| ||||| | ||||||||| | || | | ||| || || Sbjct 35454798 GATGTTTGTTGGTGTTGGTGCTTCTCGAGTTCGCGATTTATTCAAGAAGGCCAAAGAGAA 35454739 Query 175464 TCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG 175523 | ||||| ||||| || ||||||| |||||||| || || | |||| | | |||| Sbjct 35454738 TGCTCCATGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGGGGTACTGG 35454679 Query 175524 ---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGAT 175580 |||| || ||||| || |||||||| || | || ||||| | || || || Sbjct 35454678 AATTGGT---GGAGGGAATGATGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAAT 35454622 Query 175581 GGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATAT 175640 |||||| ||||| | | || || || | || ||||| || ||||| | | || || Sbjct 35454621 GGATGGATTTGAGGGTAATACGGGTATCATTGTCATTGCAGCTACTAACAGGGCTGACAT 35454562 Query 175641 CCTTGAT 175647 |||||| Sbjct 35454561 TCTTGAT 35454555 Score = 89.7 bits (98), Expect = 6e-13 Identities = 161/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||||| ||| | || ||| ||||| |||||||||| |||| | || |||| || | Sbjct 17262353 GGGACTTTGACTATGATTATTTTGGGTTCAAAACCCTCGAGAGGTCTTACCTCTTGAA-G 17262411 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | |||| | || || ||| || ||||||| ||| | ||||| | || || Sbjct 17262412 GTTCAAGGGCAGGTTGTTGAAAGGCCC-CAACACATGTTGATGAGAGTCGCGGTTGGGAT 17262470 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGA-CATACGACAAGATGTCCCAAGGTATGT 75305 ||| ||| ||||| || |||| || ||| | ||| ||| |||||| ||| | || Sbjct 17262471 TCACAAGGATGACATAGAATCTG-CTGTCAGAACTTACCACATGATGTCTCAACGATGGT 17262529 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| || ||| | ||||| || ||||||||||| || || || || || Sbjct 17262530 TCACCCATGCATCTCCAACACTTTTCAATGCTGGAACTCCTAGGCCTCA 17262578 Score = 84.2 bits (92), Expect = 3e-11 Identities = 248/377 (66%), Gaps = 14/377 (4%) Strand=Plus/Plus Query 175221 TGAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGC 175280 ||| || ||||| |||| |||||| | ||| | || || | || || ||||| Sbjct 4469410 TGAGCTGCAAGAGGTTGTTGATTTTTTGAAGAACCCTGATAAGTACACTGCGCTGGGTGC 4469469 Query 175281 CAAGATCCCCCGAGGCGCCCTTCTCG-CGGGTAAGCCAGGTACGGGAAAGACCCTCCTCG 175339 ||||| || || ||||| | |||| | || || || || ||||| || || | Sbjct 4469470 GAAGATTCCGAAGGGGTGTCTTCTGGTCGGGCCA-CCGGGAACCGGGAAGACGCTTCTAG 4469528 Query 175340 CCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTG 175399 | | || | ||||| ||| | || || || || |||| | || || | || | Sbjct 4469529 CTAGGGCTGTGGCGGGGGAAGCGGGAGTGCCGTTTTTCTCGTGCGCGGCTTCAGAGTTCG 4469588 Query 175400 TGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCG 175459 ||||| ||||||| || || ||||| ||||| | ||| | ||||| | || | Sbjct 4469589 TGGAGCTGTTTGTGGGGGTTGGTGCGTCGAGGGTGAGGGATTTGTTTGAGAAGGC----G 4469644 Query 175460 AAAATCAA----CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || | || || || ||||| ||||||||||||||||| || || || | ||| | Sbjct 4469645 AAGAATAAGGCGCCGTGCATTGTTTTCATTGATGAGATTGACGCCGTCGGGAGGCAGAGA 4469704 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | || || | | | | | || || ||||| ||||| || ||||| || || |||| Sbjct 4469705 GGGGCGGGGCTTGGAGGTGGG--AACGATGAGAGGGAACAGACCATTAACCAGCTTCTCA 4469762 Query 175574 CCGAGATGGATGGCTTT 175590 | ||||||||||| ||| Sbjct 4469763 CGGAGATGGATGGGTTT 4469779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564320359040