Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq6 257 2e-63 seq9 221 1e-52 seq2 178 1e-39 seq7 163 3e-35 seq1 140 4e-28 seq8 136 5e-27 seq4 125 8e-24 seq5 89.7 6e-13 seq11 87.8 2e-12 >seq6 Length=31977256 Score = 257 bits (284), Expect = 2e-63 Identities = 447/643 (70%), Gaps = 18/643 (3%) Strand=Plus/Minus Query 66585 TATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGT 66644 |||||||| | || |||| | ||||| ||||| |||||| |||||||||||| | Sbjct 21889030 TATTAAAGAGTGTTTTCACGTGATAGAACCTCTTCAAGGAATATAAAGTTTTCATGAGAC 21888971 Query 66645 TGATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAG 66704 |||| || || || ||||||||||| |||||| || || | ||| || || ||||| Sbjct 21888970 TGATTTTGAGTTGTCATCCATGCACGAATACCTTCGTTTAAGAAAATATTTTTAGTGTAT 21888911 Query 66705 AACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 66764 || |||| || ||| ||| | ||| ||||| || || || ||||||||| Sbjct 21888910 AAAGTCTTAAA----------TCTATTGCACAGATTTCTTGAGAAACGAAATCATAAGCA 21888861 Query 66765 CGAAGGTTGAGAGCAAG-ACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGG 66823 || ||||| | || | | ||||| || || | ||| | || | || | || || Sbjct 21888860 CGTAGGTTCA-AGGACGAACCAACTATCCCAAGAACACTCATTCATAAACGAGTTACTGG 21888802 Query 66824 AACAAACAACATAAAGAAATGCAACCACCTCTTATT-GCTAAACGCAATACCAAAGATCT 66882 |||||||||||||| ||||| ||||| |||||| | ||| ||| |||||||| | Sbjct 21888801 TACAAACAACATAAATAAATGTAACCAATGCTTATTAGAGAAAAACAACCCCAAAGATTT 21888742 Query 66883 GAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAG-TTTCTTCCTCTTGAGTAGAGTCG 66941 | ||||| ||||| || |||||| |||||| || | ||| ||| ||| || | || Sbjct 21888741 GGGACCAAAAGCGATTAACAGTAATCATTGAATAGGTTTTTTTCGGGTTGGGTTGGGTTA 21888682 Query 66942 AATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACA 67001 || || || || ||| | |||||||||||| | | |||| | ||||| || || Sbjct 21888681 AAAGCACAAAATGTATTTTCACCATCACCATCTTCAAATAAAGTACTTTCTACCGTTGCA 21888622 Query 67002 CCATGAATGGCAGAAAGCAATGCACCACCCAGGATAC-CTG-CTACACCCATCATATGAA 67059 |||||||| || | || | |||| |||||| |||| || | || |||| |||||||| Sbjct 21888621 CCATGAATAGCGCATAGTAGTGCAACACCCA--ATACAATGACAACTCCCAGCATATGAA 21888564 Query 67060 ACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTG 67119 | ||||| || ||||| |||| |||| ||| | || | | || | |||| | |||| Sbjct 21888563 ATGGGTTTAATGTCCAAGTATGAAATCTTTGGAAAAATATGATGATTTGAAAATTAGCTG 21888504 Query 67120 AGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGA 67179 | ||| ||||| || || |||| | |||||||| || || || || || | Sbjct 21888503 CTCCATTAAAACTAGGAGCAAAGAATCAACCAAACTGACCCAGTGGATAAATAAGGAATA 21888444 Query 67180 CACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATT 67222 || |||||||| | | || ||||| ||||| ||||| |||| Sbjct 21888443 CATAAACAAAAATAACAATTGGACCTGAGAATGCAATTACATT 21888401 >seq9 Length=37469608 Score = 221 bits (244), Expect = 1e-52 Identities = 519/775 (67%), Gaps = 24/775 (3%) Strand=Plus/Minus Query 68020 AACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTG 68079 ||||| ||||| | |||| ||| || | ||||| || | | |||| || || ||| Sbjct 1918499 AACCAAATACCTATTACAG-CCAAACAACTAGGAAAAAATTAAAA-AACGAGAATTATTG 1918442 Query 68080 AACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAA 68139 || |||||| || ||||||| | | || || |||| ||||| | ||| | || Sbjct 1918441 AAACTTGCATATTGAAAGATCAATCCGACAAAATAATCATGAGCAGCTATAATATCATAG 1918382 Query 68140 GTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCA 68199 | | || | |||||| || |||||||| | || ||| |||| || | Sbjct 1918381 ATTTTGTCCTTTTGACCAAATTTGTAACCTTCATTAG------CAGATTCA-----TTAA 1918333 Query 68200 CGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAAT 68259 | | ||| ||| || | |||| ||| || |||||||| || || |||||| Sbjct 1918332 GGTA-----GAA--AGTTACTAAGGAATCATTTATAGCACTGAATAGGGAGTTGCCAAAT 1918280 Query 68260 ACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAC 68319 || |||| || | | || || || | ||||| || || || ||||| || || Sbjct 1918279 ACACCAGTCACACTTAACACGTGAAATTGATGCATAAGAATATTATGCTCAATCTGAAAT 1918220 Query 68320 ACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCT 68379 || | ||| | |||||||||||| |||| || | ||||||| | || || || ||| Sbjct 1918219 ACAATCATAAAATTGAAAGTACCATAAATTCCTAAAGGCATTCCATCCGAAAAGCTTCCT 1918160 Query 68380 TGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCA 68439 ||||| | |||||||| || ||| || | | |||||| |||| | || |||||| Sbjct 1918159 TGACCAATAGGATAGATCAAGAAAACAACAATAACAGCTGCATCAGGAGTTGAATATGCA 1918100 Query 68440 ACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTAT 68499 ||| |||||| || ||||||| | |||| || ||||||||||||||| |||||||| Sbjct 1918099 ACAGCAATCCAATGATGCATACCCAAACGAAAGTTAAGTTCCCATTCACGACCCATGTA- 1918041 Query 68500 GCAA-AGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAA 68558 |||| | || || | ||| || | | | |||| ||||||| | ||||| | Sbjct 1918040 GCAAGCTACACTAAGTAAGAAATGTAGAACAATTAGTTCATAAGGACCGTCGTTGTATAG 1917981 Query 68559 CCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGA 68618 || ||||||| | ||||||| || |||||||| || | | | || || | Sbjct 1917980 GCATTCATCAACAAAAGTCACTTCCCATATAGGATAAAAATGCAAATCTATAGCCGCAAA 1917921 Query 68619 ACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGG 68678 | || ||| | |||||||||||||| ||||| ||||| || || || ||| |||||| Sbjct 1917920 AGTATGAATAGTCGCACCAGAAATGATATTGTTTCCATAAAGTAGGGATCCAAAAACAGG 1917861 Query 68679 TTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGA 68737 || |||||||||| | ||||| || || ||| |||| || |||| || || ||| | Sbjct 1917860 CTCGTGAATACCATCATTATCCACTGGAGGGGCAACGATAAAAGCGATAATAAATACA-A 1917802 Query 68738 TGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAG 68792 |||| | | || |||| ||||||| || || ||| | | | |||||| Sbjct 1917801 AAGTTGTGGTTAACACAATAGGAATCATCAAAACACCAAACAATCATATGTAAAG 1917747 Score = 123 bits (136), Expect = 3e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 68578 GCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCA 68637 |||||||| || |||||||| || | ||| || || | ||| |||||| || |||||| Sbjct 33213724 GCTTCCCATATAGGATAAAAATGCAAACCTATAGCCGTGGAAGTAGGAATAATTGCACCA 33213665 Query 68638 GAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATG 68697 |||||||| || || ||||| || | || ||| | ||||||||||||||||||| || Sbjct 33213664 GAAATGATATTATTTCCATAAAGTAAGGATCCAAAATCAGGTTCACGAATACCATCAATA 33213605 Query 68698 TCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTGCAAGCAGCGT 68756 || | || |||||| | || || |||| || || ||||| ||||| | | | || Sbjct 33213604 TCTAATGGAGGAGCAACAATAAAAGCGATAATAAATACAGA-AGTTGCAGTCAATAAAGT 33213546 Query 68757 AGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTT 68798 | | ||||||| || || ||||| | | |||||| || || Sbjct 33213545 AAGAATCATCAAAACACCAAACCATCTTATGTAAAGACGATT 33213504 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || ||||||||| || | Sbjct 24301676 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 24301735 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGAC 66675 |||| || ||||| ||||||||||| || Sbjct 24301736 GATCTTGAGCTGCCATCCATGCACGAATAC 24301765 >seq2 Length=49040938 Score = 178 bits (196), Expect = 1e-39 Identities = 246/341 (72%), Gaps = 15/341 (4%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || |||||||| || ||||| || || ||||||| || ||||||||| | | Sbjct 27893351 ATTAAAGAGCGTTACCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAAGCT 27893292 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || ||| | ||| |||||| |||||| || || ||||| || || ||||| | Sbjct 27893291 GATCTTGAGCTGCAATCCACACACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTATA 27893232 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGA-TCTCTTGGGATACAAAGTCATAAGCA 66764 | | || || || || ||||| ||||| | | | ||||| || || || ||||||||| Sbjct 27893231 AAATATCAAATTCAGGATCTTCCGCTGCGCAAAATTTCTTGAGAAACGAAATCATAAGCA 27893172 Query 66765 CG-AAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGG 66823 || ||||| || | | ||| | || | | | ||| |||| | ||| || || || Sbjct 27893171 CGTAAGGTCAAGGCCTA-ACCGACTATCCTAAGAGCACTCATCCATAAACCAATTACTGG 27893113 Query 66824 AACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTG 66883 ||||| |||||||||||||| | |||| ||| |||| |||||||| || Sbjct 27893112 TACAAATAACATAAAGAAATG----------TAATTGGAAAAAGCAACCCCAAAGATTTG 27893063 Query 66884 AGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTT 66924 ||||| ||||| || ||| |||||||| |||||||||| Sbjct 27893062 GGACCAAAAGCGATTAGCA--TACCATTGAATAAGTTTCTT 27893024 >seq7 Length=51758522 Score = 163 bits (180), Expect = 3e-35 Identities = 169/220 (77%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 68284 AAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCA 68343 || || ||||| || || || ||||| || || || || | ||| | |||||||||||| Sbjct 47750343 AATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAGTACCA 47750284 Query 68344 GAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAG 68403 ||||| || | |||||| | || || || |||||||| | |||||||| || ||| Sbjct 47750283 GAAATTCCTAAAGGCATACCATCCGAAAAGCTTCCTTGACCAATAGGATAGATCAAGAAA 47750224 Query 68404 ACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCA 68463 || || | || ||||||||||| || || ||||||||| ||||||||||||||||| Sbjct 47750223 ACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCC 47750164 Query 68464 AGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAA 68503 |||||| | |||||| |||||||| |||||||| |||| Sbjct 47750163 AGACGAAAACTAAGTTCTCATTCACGACCCATGTA-GCAA 47750125 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||| ||||||||||||| || ||||||| ||| ||||| || ||| Sbjct 1496642 CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTG 1496701 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 1496702 AGCTACTGAGGA 1496713 >seq1 Length=52205531 Score = 140 bits (154), Expect = 4e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 66684 AATAGAATGTTCTTTGTGTAGAACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCT 66743 || ||||| || || |||||||| ||||| || || || ||||| ||||| | ||| ||| Sbjct 38350292 AAGAGAATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCTTCCGCTGCGCGGATTTCT 38350233 Query 66744 TGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTT 66803 || || || || ||||||||||| | ||| || || | ||| | | || | | ||| Sbjct 38350232 TGAGAAACGAAATCATAAGCACGTAAGTTCAGGGCCAAACCGACTACCCCAAGAGCACTC 38350173 Query 66804 GTCCAAAGACCCATAACAGGAACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTA 66863 |||| | ||| | || || ||||| |||||||||||||| ||||| | |||||| | Sbjct 38350172 ATCCATAAACCAGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAA 38350113 Query 66864 AACGCAATACCAAAGATCTGAGACCAGAAGCG 66895 || |||| |||||||| || ||||| ||||| Sbjct 38350112 AAAGCAACCCCAAAGATTTGGGACCAAAAGCG 38350081 >seq8 Length=59662532 Score = 136 bits (150), Expect = 5e-27 Identities = 187/260 (72%), Gaps = 11/260 (4%) Strand=Plus/Plus Query 66656 TGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGAACGTCTCGAA 66715 ||||| ||| ||||||| ||||| || || ||||| || || ||| ||| ||||| || Sbjct 1232625 TGCCATCCACGCACGAATACCTT--TTTAAGAGAATATTTTTGTTGTTGAAAGTCTCAAA 1232682 Query 66716 CTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAG 66775 || || | ||| ||||| | ||| ||||| || || || |||||||||| | ||| | Sbjct 1232683 TTCAGGATATTCCGCTGCGCGGATTTCTTGAGAAACGAAATCATAAGCACATAAGTTCAC 1232742 Query 66776 AGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAACAAACAACAT 66835 || | ||| | | || | | ||| | || | ||| | || || ||||| ||||| Sbjct 1232743 GGCCAAACCGACCACCCCAAGAGCACTCATTCATAAACCAGTTACTGGTACAAATAACAT 1232802 Query 66836 AAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAGACCAGAAGCG 66895 ||||||||| ||||| || ||| |||| |||||||| || ||||| ||||| Sbjct 1232803 AAAGAAATGTAACCA------AT---GAAAAGCAACCCCAAAGATTTGGGACCAAAAGCG 1232853 Query 66896 GTTTGCAGTAACCATTGAGT 66915 || |||||||||||||||| Sbjct 1232854 ATTAGCAGTAACCATTGAGT 1232873 >seq4 Length=45960019 Score = 125 bits (138), Expect = 8e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || ||||||||| || | Sbjct 43482412 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 43482353 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTT-GTGTAG 66704 |||| | ||||| ||| ||||||| |||||| || || ||||| || ||| ||||| Sbjct 43482352 GATCTTGAATTGCCATCCACGCACGAATACCTTCGTTTAAGAGAATATTTTTTTGTGTAC 43482293 Query 66705 AACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 66764 || || || || || | |||| | ||| | ||| ||||| || || || ||||||||| Sbjct 43482292 AAAGTATCAAATTCAGAATCTT-TCATGCACGGATTTCTTGAGAAACGAAATCATAAGCA 43482234 Query 66765 CGAAGGTTGAG 66775 || | ||| || Sbjct 43482233 CGTAAGTTCAG 43482223 >seq5 Length=40819286 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||||||||||||||||| || ||||||| ||| ||||| || ||| Sbjct 7641454 CTCCCCAAGTAGGATTTGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTG 7641513 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 7641514 AGCTACTGAGGA 7641525 >seq11 Length=50367376 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 66822 GGAACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATC 66881 || ||||| |||||||||||||| ||||| |||||| ||| |||| |||||||| Sbjct 3718583 GGTACAAATAACATAAAGAAATGTAACCAATGTTTATTGGAAAAAGCAACCCCAAAGATT 3718524 Query 66882 TGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAA 66917 || ||||| ||||| || | |||||||||||| ||| Sbjct 3718523 TGGGACCAAAAGCGATTAGGAGTAACCATTGAATAA 3718488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572049337318560