Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3 136 8e-27 >seq3 Length=52284309 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | ||| | || | || | || | ||| || ||||||||||| Sbjct 30274358 ATACCACCTCTCAAACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGAATATTATAATCG 30274299 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| | |||| || | ||||||||||||||| || | ||||| ||||| || Sbjct 30274298 GCAAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCTGGA 30274239 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || ||| ||| |||||| || | || ||||||||| Sbjct 30274238 GGGATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATGGTGTCAGACGATTCT 30274179 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| || ||||| | ||||||||||| Sbjct 30274178 ACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30274129 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | ||| | || || || | || | ||| || ||||||||||| Sbjct 30309788 ATGCCACCTCTTAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTATAATCT 30309729 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| | |||| || | ||||||||||||||| || | ||||| ||||| || Sbjct 30309728 GCAAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCCGGA 30309669 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || || || ||| ||| |||||| |||| || ||||||||| Sbjct 30309668 GGGATACCCTCTTTGTCCTGGATCTTAGCTTTGACATTATCAATAGTGTCAGACGATTCT 30309609 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| || ||||| | ||||||||||| Sbjct 30309608 ACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30309559 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || || || | || | || | ||| | ||||| |||||| ||||| Sbjct 30314299 ATGCCACCCCTGAGGCGAAGCACGAGGTGGAGAGTGGATTCTTTTTGGATATTGTAATCG 30314240 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | ||| ||||| |||||||| | |||||| || |||||| Sbjct 30314239 GCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGT 30314180 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| || ||| || | || ||||||||| Sbjct 30314179 GGGATACCCTCCTTGTCTTGAATCTTGGCTTTCACGTTATCAATGGTGTCAGACGATTCT 30314120 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| || ||||| | ||||||||||| Sbjct 30314119 ACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30314070 Score = 114 bits (126), Expect = 3e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||| | | || || |||| || | ||| ||||| |||||||| | ||| Sbjct 30283954 GATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAGATAAGTCT 30283895 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || |||||||| || || || || ||||| || || ||| || ||| || | Sbjct 30283894 CTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGCTTTCACGTTATCAATGGT 30283835 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || ||||||||||| || || || ||||| || ||||| || ||||| | |||||||| Sbjct 30283834 GTCAGACGATTCTACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTG 30283775 Query 192534 CAT 192536 ||| Sbjct 30283774 CAT 30283772 Score = 111 bits (122), Expect = 3e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || || || || || | ||| | || || ||||||||||||| Sbjct 30379093 ATACCACCACGAAGTCGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTATAATCA 30379034 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| || || || |||||||| | ||||||||||| ||| Sbjct 30379033 GCAAGGGTACGCCCATCTTCCAGCTGCTTTCCGGCAAAGATAAGCCTCTGTTGATCTGGT 30378974 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 ||||| ||||| || || || || || ||| ||||| || | ||| || ||| Sbjct 30378973 GGTATGCCTTCCTTGTCCTGAATCTTTGCTTTCACATTGTCAATTGTATCAGAGCTTTCC 30378914 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | |||||||| || || || | || || | |||||| |||||| Sbjct 30378913 ACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATTTGCATT 30378863 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || || | || || || |||| ||||||||||| |||||||| || | ||| Sbjct 30284865 ATATTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTC 30284806 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| ||||| || |||||||| || || || || ||| |||||| || | | Sbjct 30284805 TGCTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTTGCTTTCACATTATCAATTGTA 30284746 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || || | ||||||||||| || || | || || | |||||||||| Sbjct 30284745 TCAGAGCTCTCCACCTCCAAGGTAATGGTTTTCCCTGTCAGAGTCTTCACAAATATCTGC 30284686 Query 192535 ATT 192537 ||| Sbjct 30284685 ATT 30284683 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| | || || ||||| | ||| | || || ||| ||||||||| Sbjct 30378865 ATTCCACCACGAAGCCTCAACACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAATCA 30378806 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| || || ||||||||||| | || || || || ||| Sbjct 30378805 GCAAGGGTACGCCCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGT 30378746 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || ||||| || ||||||||| || | ||| || ||| Sbjct 30378745 GGAATCCCCTCTTTGTCCTGTATCTTTGCCTTTACATTATCAATGGTATCGGAACTTTCA 30378686 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | |||||||||||| || || || || || | ||| || ||||| Sbjct 30378685 ACCTCCAAAGTAATGGTTTTTCCCGTCAAGGTCTTGACAAAAATTTGCAT 30378636 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| | || ||||| || ||||| | ||| || ||||||||||| Sbjct 30378637 ATGCCACCACGAAGCCTCAAAACTAAGTGCAAAGTGGACTCCTTCTGAATATTATAATCC 30378578 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| | |||| || | ||||| ||||||||||| | ||||| || || || Sbjct 30378577 GCCAGGGTTCTTCCATCTTCAAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGG 30378518 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || ||| |||||| || | |||||| || Sbjct 30378517 GGAATACCCTCCTTGTCCTGAATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCC 30378458 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||||||||| || || || || || | ||| || ||||| Sbjct 30378457 ACCTCCAAGGTAATGGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 30378408 Score = 98.7 bits (108), Expect = 2e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||||| | || || |||| |||| || || ||||||||||| | || Sbjct 30284638 GATGTTATAATCAGCAAGGGTACGCCCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCT 30284579 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||||||| |||||||| ||||| || || || || || || |||||| || | Sbjct 30284578 CTGTTGATCTGGTGGTATGCCTTCCTTGTCCTGAATCTTTGCCTTCACATTATCGATGGT 30284519 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || ||| || || | ||||||||| || || || || || || | ||| || || Sbjct 30284518 GTCAGAACTTTCAACCTCCAAAGTAATGGTCTTTCCTGTCAACGTCTTTACAAAAATTTG 30284459 Query 192534 CATT 192537 |||| Sbjct 30284458 CATT 30284455 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||||||||| | | |||| | |||| || | |||||||||||||| || | ||| Sbjct 30274538 ATATTATAATCGGCAAGGGTTCTTCCATCCTCAAGCTGTTTACCAGCAAATATCAGCCTC 30274479 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || || || || || || ||||| || || ||||||||| || | | Sbjct 30274478 TGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTTACATTATCAATGGTA 30274419 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| || || || | || ||||| || ||||| || || || | ||| |||||| Sbjct 30274418 TCTGAACTCTCCACCTCCAAGGTTATGGTCTTTCCAGTCAAAGTCTTCACAAAAATCTGC 30274359 Query 192535 AT 192536 || Sbjct 30274358 AT 30274357 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| | || || || || | ||||| ||||| |||||||||||| Sbjct 30284457 ATTCCACCACGAAGCCTCAAAACCAAGTGCAGAGTAGATTCTTTCTGGATATTATAATCC 30284398 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| | |||| || | ||||| || |||||||| | ||||| || || || Sbjct 30284397 GCAAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGG 30284338 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || ||| |||||| || | ||||| || Sbjct 30284337 GGAATACCCTCCTTATCCTGAATCTTGGCTTTCACATTATCAATGGTGTCTGAACTCTCC 30284278 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||||||||| || || || || || | ||| || ||||| Sbjct 30284277 ACCTCCAAGGTAATGGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 30284228 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| ||||||||||| |||||||| || | ||||| ||||| ||||| || || || | Sbjct 30275196 CATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCT 30275137 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | ||||| || || ||| |||||| || | ||| || || || || | |||| Sbjct 30275136 TGTCTTGAATCTTTGCTTTCACATTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAA 30275077 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||| || || || | || || | ||||||||||||| Sbjct 30275076 TGGTCTTCCCTGTCAGAGTCTTCACAAATATCTGCATT 30275039 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| | || || || || | ||| | || || ||| |||||||| Sbjct 30310016 ATGCCACCACGAAGCCTCAAAACCAAGTGCAGAGTGGATTCCTTCTGGATGTTATAATCC 30309957 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| | || || | |||||||||||||| || | ||||| ||||| || Sbjct 30309956 GCAAGGGTTCTACCGTCTTCAAGCTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGA 30309897 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| |||||| || | |||||| || Sbjct 30309896 GGGATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCC 30309837 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || ||||| || |||||||| || || | ||| |||||||| Sbjct 30309836 ACCTCCAAGGTTATGGTCTTTCCAGTTAAAGTCTTCACAAAAATCTGCAT 30309787 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||||||||||||||||||| || | ||||| ||||| ||||| || || || | Sbjct 30310399 CATCTTCCAATTGTTTACCAGCAAAAATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCT 30310340 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | || || || || ||| |||||| || | ||| || || || || | |||| Sbjct 30310339 TGTCCTGAATCTTTGCTTTCACATTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAA 30310280 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||| || || || | || || | ||||||||||||| Sbjct 30310279 TGGTCTTCCCTGTCAGAGTCTTCACAAATATCTGCATT 30310242 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| ||||||||||| |||||||| || | ||||| ||||| ||||| || || || | Sbjct 30315138 CATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCCTCCT 30315079 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | || || || || ||| |||||| || | ||| || || || || | |||| Sbjct 30315078 TGTCCTGAATCTTTGCTTTCACATTATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAA 30315019 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||||| || || | || || | ||||||||||||| Sbjct 30315018 TGGTTTTCCCTGTCAGAGTCTTCACAAATATCTGCATT 30314981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984471069535800