Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3 140 6e-28 >seq3 Length=52284309 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || | || || || | || | ||| || ||||||||||||| Sbjct 30309788 ATGCCACCTCTTAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTATAATCT 30309729 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | | || || | |||||||||||||||||| | ||||| || || || Sbjct 30309728 GCAAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCCGGA 30309669 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| || || || ||| ||| |||||| ||||| || ||||||||| Sbjct 30309668 GGGATACCCTCTTTGTCCTGGATCTTAGCTTTGACATTATCAATAGTGTCAGACGATTCT 30309609 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| || ||||| | |||||||||||| Sbjct 30309608 ACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30309559 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | || | || | || | ||| || |||||||||||| Sbjct 30274358 ATACCACCTCTCAAACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGAATATTATAATCG 30274299 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | | || || | |||||||||||||||||| | ||||| || || || Sbjct 30274298 GCAAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCTGGA 30274239 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || ||| ||| |||||| || || || ||||||||| Sbjct 30274238 GGGATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATGGTGTCAGACGATTCT 30274179 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| || ||||| | |||||||||||| Sbjct 30274178 ACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30274129 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || || || | || | || | ||| | ||||| ||||| ||||| Sbjct 30314299 ATGCCACCCCTGAGGCGAAGCACGAGGTGGAGAGTGGATTCTTTTTGGATATTGTAATCG 30314240 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | ||| ||||| ||||| || | |||||| ||||||||| Sbjct 30314239 GCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGT 30314180 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || ||| || ||| || || || ||||||||| Sbjct 30314179 GGGATACCCTCCTTGTCTTGAATCTTGGCTTTCACGTTATCAATGGTGTCAGACGATTCT 30314120 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| || ||||| | |||||||||||| Sbjct 30314119 ACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30314070 Score = 116 bits (128), Expect = 7e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| | | || || | || || | ||| ||||| ||||| || | |||| Sbjct 30283953 ATATTGTAATCGGCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAGATAAGTCTC 30283894 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||||||||| || || || || ||||| || || ||| || ||| || || Sbjct 30283893 TGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGCTTTCACGTTATCAATGGTG 30283834 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || ||||||||||| || || || ||||| || ||||| || ||||| | |||||||||| Sbjct 30283833 TCAGACGATTCTACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGC 30283774 Query 172068 AT 172069 || Sbjct 30283773 AT 30283772 Score = 102 bits (112), Expect = 1e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| || |||| || | || | || ||||||||||| ||||||||||| | || Sbjct 30284866 AATATTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCT 30284807 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || ||||| || |||||||| || || || || ||| |||||| || || Sbjct 30284806 CTGCTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTTGCTTTCACATTATCAATTGT 30284747 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || || || || | ||||||||||| || || | || || | |||||||| Sbjct 30284746 ATCAGAGCTCTCCACCTCCAAGGTAATGGTTTTCCCTGTCAGAGTCTTCACAAATATCTG 30284687 Query 172067 CATT 172070 |||| Sbjct 30284686 CATT 30284683 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| | || ||||| || ||||| | ||| || |||||||||||| Sbjct 30378637 ATGCCACCACGAAGCCTCAAAACTAAGTGCAAAGTGGACTCCTTCTGAATATTATAATCC 30378578 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | | || || | ||||| |||||||| || | ||||| ||||| || Sbjct 30378577 GCCAGGGTTCTTCCATCTTCAAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGG 30378518 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || ||| |||||| || |||||||| || Sbjct 30378517 GGAATACCCTCCTTGTCCTGAATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCC 30378458 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||||||||| || || || || || | || || ||||| Sbjct 30378457 ACCTCCAAGGTAATGGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 30378408 Score = 89.7 bits (98), Expect = 9e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || |||| || | || | || ||||||||||| ||||||||||| | || Sbjct 30275222 AATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCT 30275163 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || ||||| || || || || ||||| || || ||| |||||| || || Sbjct 30275162 CTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATCTTTGCTTTCACATTATCAATTGT 30275103 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || || || || | |||||||| || || || | || || | |||||||| Sbjct 30275102 ATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACAAATATCTG 30275043 Query 172067 CATT 172070 |||| Sbjct 30275042 CATT 30275039 Score = 89.7 bits (98), Expect = 9e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| ||| || || |||| || | || | || ||||||||||||||||||||| Sbjct 30310433 TCTTTCTGAATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGTTTACCAGCAAAA 30310374 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 || | ||||| || || ||||| || || || || || || || || ||| |||||| Sbjct 30310373 ATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTTGCTTTCACATTA 30310314 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 || ||||| || || || || | |||||||| || || || | || || | Sbjct 30310313 TCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACA 30310254 Query 172059 AATATCTGCATT 172070 |||||||||||| Sbjct 30310253 AATATCTGCATT 30310242 Score = 89.7 bits (98), Expect = 9e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || |||| || | || | || ||||||||||| ||||||||||| | || Sbjct 30315164 AATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCT 30315105 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || ||||| || || || || || || || || ||| |||||| || || Sbjct 30315104 CTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATTGT 30315045 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || || || || | ||||||||||| || || | || || | |||||||| Sbjct 30315044 ATCAGAGCTCTCCACCTCCAAGGTAATGGTTTTCCCTGTCAGAGTCTTCACAAATATCTG 30314985 Query 172067 CATT 172070 |||| Sbjct 30314984 CATT 30314981 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||||| || || || || | ||| | || || ||||||||||| Sbjct 30379093 ATACCACCACGAAGTCGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTATAATCA 30379034 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || |||| || || || ||||| || | |||||||| || ||| Sbjct 30379033 GCAAGGGTACGCCCATCTTCCAGCTGCTTTCCGGCAAAGATAAGCCTCTGTTGATCTGGT 30378974 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 ||||| ||||| || || || || || ||| ||||| || ||||| || ||| Sbjct 30378973 GGTATGCCTTCCTTGTCCTGAATCTTTGCTTTCACATTGTCAATTGTATCAGAGCTTTCC 30378914 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | |||||||| || || || | || || | ||||| |||||| Sbjct 30378913 ACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATTTGCATT 30378863 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| | || || || || | ||| | || || || |||||||| Sbjct 30310016 ATGCCACCACGAAGCCTCAAAACCAAGTGCAGAGTGGATTCCTTCTGGATGTTATAATCC 30309957 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | ||||||||||||||||| | ||||| || || || Sbjct 30309956 GCAAGGGTTCTACCGTCTTCAAGCTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGA 30309897 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || ||| |||||| || |||||||| || Sbjct 30309896 GGGATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCC 30309837 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || |||||||| || || | || |||||||| Sbjct 30309836 ACCTCCAAGGTTATGGTCTTTCCAGTTAAAGTCTTCACAAAAATCTGCAT 30309787 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| | || || ||||| | ||| | || || || |||||||| Sbjct 30378865 ATTCCACCACGAAGCCTCAACACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAATCA 30378806 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || |||| || || |||||||| || | || || ||||| ||| Sbjct 30378805 GCAAGGGTACGCCCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGT 30378746 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| || ||||| || ||||||||| || ||||| || ||| Sbjct 30378745 GGAATCCCCTCTTTGTCCTGTATCTTTGCCTTTACATTATCAATGGTATCGGAACTTTCA 30378686 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||||||| || || || || || | || || ||||| Sbjct 30378685 ACCTCCAAAGTAATGGTTTTTCCCGTCAAGGTCTTGACAAAAATTTGCAT 30378636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905127989546400