Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9 158 4e-33 seq8 136 1e-26 seq11 125 2e-23 seq2 120 9e-22 seq7 84.2 6e-11 >seq9 Length=37469608 Score = 158 bits (174), Expect = 4e-33 Identities = 289/418 (69%), Gaps = 8/418 (2%) Strand=Plus/Plus Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || |||||||||||| ||| |||| ||| || || || ||||| ||||||||||| Sbjct 35454609 CTCAAATCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCC 35454668 Query 288996 ACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 || | ||| || | | | ||||| | ||||||||||||||||| |||| || Sbjct 35454669 TCCACC--AATT-CCAGTACC---CCTTTGCCTTCCAACAGCATCAATTTCATCAACAAA 35454722 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 || | || |||| ||| | | | || | ||||| || | || || || || || Sbjct 35454723 AACAATGCATGGAGCATTCTCTTTGGCCTTCTTGAATAAATCGCGAACTCGAGAAGCACC 35454782 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGC 289175 || ||||||| |||| |||||||| |||||| | || | | || |||| ||| ||| Sbjct 35454783 AACACCAACAAACATCTCTACAAACTCAGAACCTGAGATTGAAAAAAATGGGACACCTGC 35454842 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 ||| ||||| | ||| | || | ||||||||| || |||||||| || || | | || Sbjct 35454843 TTCACCTGCAATAGCCTTTGCTAAAAGTGTCTTCCCAGTTCCAGGAGGACCAACAAGAAG 35454902 Query 289236 AACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAA-AAATT 289294 ||| || ||||||| |||||| ||| | || ||||| |||| ||||| ||||| Sbjct 35454903 AACACCTTTTGGTATGCGAGCCCCAACAGCAGTGAATCTCTCA-GGCTTTTTAAGAAATT 35454961 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | || | ||| || || | || || ||||| ||| || ||||| |||| || Sbjct 35454962 CCACCACCTCCATAAAATCCTGCTTGGCTTCATCCACTCCAGCAACATCGTCAAATGT 35455019 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/105 (80%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||| || |||||||| ||||| || ||||| | |||||| |||| || Sbjct 17262950 TACCTTTCCTCTTGCCTCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGTA 17262891 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 ||| |||| |||||| ||||| || ||||| || || ||||||| Sbjct 17262890 ACATTGGAACAATACCGTTGGACGTCCCATTTGTCCCACGAATAT 17262846 >seq8 Length=59662532 Score = 136 bits (150), Expect = 1e-26 Identities = 344/514 (67%), Gaps = 22/514 (4%) Strand=Plus/Minus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 |||||||||||| |||| | | ||||||| || | || || | |||||| || || Sbjct 3423450 CCTATCAAACCTGCCAGGTCTAAGCAATGCTGAATCAAGAATTTCAGGTCTGTTAGTGGC 3423391 Query 288909 TGCCAATACAACAATAGATTCGGTTTGCT-TAAATCCATCCATACTTGTTAAAATTTGAT 288967 || | || | || | |||| | |||| |||||||| || | | |||| Sbjct 3423390 AGCAATGACTATAAC-GCCAGTGTTTCCAGTAAAACCATCCATTTCAGTGAGCAACTGAT 3423332 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC-GCTCCttttt 289026 | ||||||||||| |||||||||||| |||| |||| | | | |||| | | Sbjct 3423331 TCAGTGTTTGTTCTCTTTCATCATTT---CCTC------CACCTATACCTGTTCCTCTCT 3423281 Query 289027 t--tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA 289084 | | || |||||||| || || |||||||| | || ||| || |||||||| | || Sbjct 3423280 TCCTTCCTACAGCATCTATCTCATCAATGAATACCAAACAAGGTGAATTTTGCTTGGCCC 3423221 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 | || || || || || | || || || | ||| ||| |||| || | || || | Sbjct 3423220 TGTTGAACAAATCCCTCACCCTTGAGGCCCCTACACCCACAAACATCTCAATGAACTCTG 3423161 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | |||| | ||| | || || || ||||| | |||| | ||||| | || Sbjct 3423160 ATCCAGATAGGGAGAAGAAAGGAACCCCAGCCTCTCCTGCAATTGCCTTGGCCAGCAATG 3423101 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCC-CCA--- 289260 |||| || || || || || || | || ||||| |||||||| | ||||| | ||| Sbjct 3423100 TCTTTCCAGTCCCCGGAGGCCCTACCAAAAGAAC-CCCTTTGGGAATTTTGGCTCCAACG 3423042 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 ||||| | ||||||| ||| |||| || || || ||||| || | | || | || Sbjct 3423041 GCAGA---AAATTTCTCTGGGGTCTTCAAGAACTCAACAATCTCTTGGAAATCTTGCTTG 3422985 Query 289321 GCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 || |||||| |||||||||||| |||| |||| Sbjct 3422984 GCTTCATCAACTCCTGCTACATCCTCAAATGTAA 3422951 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||||||| | ||||| |||||||| || || | ||||||||| | |||||||| ||| Sbjct 57475441 TTGCAAAGAGATCTCTCACACGGGAAGCACCCATACCAACATATAACTCTACAAACTCAC 57475382 Query 289145 AAGCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 ||| || ||| ||| |||| |||| ||||| ||||| || ||| |||| || | Sbjct 57475381 TAGCAGAACAACT--AATAAATGGCACATCAGCTTCCCCTGCCACAGCCTTCGCTAGTAA 57475324 Query 289203 TGTCTTACCTGTTCCAGG 289220 ||||||||||| ||||| Sbjct 57475323 AGTCTTACCTGTCCCAGG 57475306 >seq11 Length=50367376 Score = 125 bits (138), Expect = 2e-23 Identities = 313/467 (67%), Gaps = 15/467 (3%) Strand=Plus/Minus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAAT---AGATTCGGTTTGCTTA 288939 ||||| ||||| | || || ||| ||||||| ||||||| ||| |||| | Sbjct 42557698 TCTAAGATATCAGGCCTATTCGTTCCTGCCAACACAACAACTCCAGAAGTGGTTCC---A 42557642 Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || | |||||| | ||| ||| | |||||||||| ||| Sbjct 42557641 AAACCATCCATCTCCACCAACAATTGATTCAATGTACTTTCACGCTCATCATTTGCACCA 42557582 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 || |||| | || |||| | |||| |||||||| || ||||| || || Sbjct 42557581 GAAAAACCACC---ACGGCCCCTTGCTCGGCCAATTGCATCAATCTCATCAATAAATATT 42557525 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 | || |||| | || || || ||| || | ||| || | |||| ||||| | Sbjct 42557524 ATACTAGGAGCACACTGCCTTGCTTCGAGAAACAAATTTCTCACCCTTGATGGTCCAACA 42557465 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAA-TGTTACATTTGCTTC 289178 |||||| ||||||| | || |||||| | |||| | ||| ||| || || | || Sbjct 42557464 CCAACAAACATTTCCATGAAATCAGAACCAGATA-TAGAAAGAAATGGCACCCCAGACTC 42557406 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 ||||| ||| | || | |||||| || ||||| || || || ||| | || ||| | Sbjct 42557405 CCCTGCAGTTGCTTTTGCTAAAAGTGTTTTTCCTGTACCTGGAGGACCCACCAACAGAGC 42557346 Query 289239 TCCCTTTGGTACTTTTGCCCCAGCAGA-CTT-ATATTTCTCAGGGCTCTTTAAAAATTCT 289296 || ||||| | |||||| ||| ||| ||| |||||||| ||| |||| | || | Sbjct 42557345 ACCTTTTGGAATTTTTGCACCA--AGATCTTCATATTTCTTTGGGTTCTTGAGGAAGTGG 42557288 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 || | ||| || |||| ||||||||||||||| || || ||||| Sbjct 42557287 ACGAACTCCATAATTTCAAGTTTTGCCTCATCACAGCCAGCAACATC 42557241 Score = 120 bits (132), Expect = 9e-22 Identities = 314/469 (67%), Gaps = 19/469 (4%) Strand=Plus/Minus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAAT---AGATTCGGTTTGCTTA 288939 ||||| ||||| | || || ||| ||||||| ||||||| ||| |||| | Sbjct 5447486 TCTAAGATATCAGGCCTATTCGTTCCTGCCAAAACAACAACCCCAGAAGTGGTTCC---A 5447430 Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || | |||||| | ||| ||| | |||||||||||||| Sbjct 5447429 AACCCATCCATCTCCACCAACAATTGATTCAATGTACTTTCACGCTCATCATTTGAACCA 5447370 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 || |||| | | |||| | ||||| |||||||| || ||||| || || Sbjct 5447369 GAAAAACCACC---ACGCCCCCTTGCTCGACCAATTGCATCAATCTCATCAATAAATATT 5447313 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCA--AATAATTCTCTTACACGGGATGCTCCAA 289117 | || |||| | || || || || || || || | ||| || | || | ||||| Sbjct 5447312 ATACTAGGAGCACACTGCCTTGC--TTCCAGAAACAAATTTCTCACCCTTGACGGTCCAA 5447255 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAA-TGTTACATTTGCT 289176 ||||||| ||||||| | ||||||||| | |||| | ||| ||| || || | Sbjct 5447254 CACCAACAAACATTTCCATGAATTCAGAACCAGATA-TAGAAAGAAATGGCACCCCAGAC 5447196 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || || || ||| | || | |||||| || ||||| || || || || | || ||| Sbjct 5447195 TCCCCAGCAGTTGCTTTTGCTAAAAGTGTTTTTCCTGTACCTGGAGGACCGACCAAGAGA 5447136 Query 289237 ACTCCCTTTGGTACTTTTGCCCCAGCAGA-CTT-ATATTTCTCAGGGCTCTTTAAAAATT 289294 | || ||||| | |||||| || || ||| |||||||| ||| |||| | || | Sbjct 5447135 GCACCTTTTGGAATTTTTGCACCT--AGTTCTTCATATTTCTTTGGGTTCTTGAGGAAGT 5447078 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| ||| || |||| ||||||||||||||| || || ||||| Sbjct 5447077 GGACAAACTCCATAATTTCAAGTTTTGCCTCATCACAGCCAGCAACATC 5447029 >seq2 Length=49040938 Score = 120 bits (132), Expect = 9e-22 Identities = 230/339 (68%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| |||||| || ||| |||||||||||| ||| | | || | Sbjct 21064908 ATTTCTAACTGTCCCATCATATTTAACCATGATGTCTTCCATAGCCTTCACCAGTCGCCT 21064967 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 || || || |||||| ||| || || || || |||||||| ||||| | | |||||| Sbjct 21064968 TTGGATGTACCCAGTTTCAGAGGTCTTCACGGCAGTATCAATAAGACCTTCCCTACCACC 21065027 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||| ||||| || || | |||| ||| || || | | | | ||| | || || || Sbjct 21065028 CATGGCATGAAAAAAGAATTCTTGAGGTGTCAGTCCACGCAGATATGAGTTTTCCACAAA 21065087 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| || ||| || || || || ||||| |||| ||||||| | Sbjct 21065088 GCCACGACTTTCAGGCCCATAATCATCTTTTGTGAAGTGAGGCAATGTCCTGTCGATGAA 21065147 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || ||||| || || || || ||||||||||| || |||| || | | |||| || || Sbjct 21065148 CCCATATGGAATTCGTTTACCCTCAACGTTCTGTTGGCCCACACAAGCAGTCATTTGAGA 21065207 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 || || | | ||| || ||||| ||||| | ||||| Sbjct 21065208 TATGTTGATAAAACTTCCTTTGGATCCAGCCGTCACCAT 21065246 Score = 113 bits (124), Expect = 1e-19 Identities = 320/487 (66%), Gaps = 20/487 (4%) Strand=Plus/Minus Query 288873 TAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT 288932 ||| || | ||| | ||||| || ||||| |||||||| | |||| ||| | || Sbjct 34691635 TAAGGCAGAGTCAAGAATATCTGCCCTGTTAGTTGCTGCAATGACAATGATAC---CAGT 34691579 Query 288933 TTG---CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATC 288989 | || ||| |||||||| ||| |||| ||| || || || || || |||||||| Sbjct 34691578 ATTACCCTCAAAACCATCCATTTCTGTCAAAAGTTGGTTCAGGGTCTGCTCTCTTTCATC 34691519 Query 288990 ATTTGAACCTCTTGAATCACCCGAATC--GCTCCtttttttA--CCAACAGCATCAATTT 289045 ||| |||| |||| | || | |||| ||| | |||||||||||||||| Sbjct 34691518 ATTC---CCTC------CACCA-ATTCCAGTTCCTCTTTGTCTTCCAACAGCATCAATTT 34691469 Query 289046 CGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACAC 289105 | |||| || | | || || | ||| | | | || | || || || | || | Sbjct 34691468 CATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGCCTTCTTGAACAAATCACGAACTC 34691409 Query 289106 GGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATG 289165 | || || |||| ||||||| |||| || ||||| |||||| | |||| | || || | Sbjct 34691408 GAGAAGCACCAACACCAACAAACATCTCAACAAACTCAGAACCAGATATTGAAAAAAAGG 34691349 Query 289166 TTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTC 289225 ||| ||||| || || | ||| | || | || ||||| || ||||| || || | Sbjct 34691348 GAACACCAGCTTCACCAGCAATAGCCTTGGCTAACAGGGTCTTTCCAGTTCCTGGAGGAC 34691289 Query 289226 CCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCT 289285 | | | |||||||| || |||| |||||| ||| | | ||||||| ||| Sbjct 34691288 CAACAAGAAGAACTCCTTTAGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCT 34691229 Query 289286 TTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAG 289345 ||| ||| || || | ||| || || | || || ||||| || || |||||| Sbjct 34691228 TTAGAAACTCCACCACCTCCATAAAGTCCTGCTTGGCTTCATCCACCCCAGCAACATCAT 34691169 Query 289346 CAAAAGT 289352 |||| || Sbjct 34691168 CAAATGT 34691162 Score = 93.3 bits (102), Expect = 1e-13 Identities = 85/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 156045 AAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || ||||| ||||||||||| ||| ||||| ||||| |||||||| | |||||| ||| Sbjct 43314746 AATCTACCTTTCCTCTTGCCTCCCCCTTGATCAACATAACGAGCAGTATCATTGAACACA 43314805 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAAT 156148 | ||||| |||| ||||||||| || || ||||| || || || || Sbjct 43314806 CGCAGCATTGGAACAATACCATTTGATGTCCCATTTGTGCCACGGAT 43314852 >seq7 Length=51758522 Score = 84.2 bits (92), Expect = 6e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 44333101 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 44333160 Query 409011 TAGAACAttttttt 409024 || ||||||||| Sbjct 44333161 GGGACCATTTTTTT 44333174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471804248774596