Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq6 221 1e-52 seq7 145 8e-30 seq2 145 8e-30 seq1 134 2e-26 seq8 111 2e-19 >seq6 Length=31977256 Score = 221 bits (244), Expect = 1e-52 Identities = 481/713 (67%), Gaps = 23/713 (3%) Strand=Plus/Plus Query 159582 TGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTT 159641 |||| |||||| | ||||| ||||| || | |||| ||| |||| | | ||| | | Sbjct 21888305 TGGACTTTTGTTGTTCTCCATGGTGCTTTTGGATTAATACGTTCCATGTTACATCAATCT 21888364 Query 159642 GAACTGGCACGTCTCATTGGTATCCGTCCTTACAATGCT---ATTGCGTTCTCTGGTCCT 159698 ||||| || | | || | | ||||| ||| | ||||| ||||| ||||| Sbjct 21888365 GAACTTGCTCAATTTTTTCAATTACAACCTTATAATAATGTAATTGCATTCTCAGGTCCA 21888424 Query 159699 ATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTC 159758 |||| | ||||||| || ||||| || || ||| ||||||||| |||| || || Sbjct 21888425 ATTGTTATTTTTGTTTATGTATTCCTTATTTATCCACTGGGTCAGTTTGGTTGATTCTTT 21888484 Query 159759 GCTCCGTCCTTTGGGGTGGCAGC-AATCTTTAGAT--TCCTGTTGTTCCTTCAAGGATTT 159815 ||||| ||| | ||||| ||| || | || || | || |||| || ||||| Sbjct 21888485 GCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATCATCATATTTTTCC---AAAGATTT 21888541 Query 159816 CACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCA 159875 || | ||||| ||||| || || |||||| ||||||||| | || | |||| ||| Sbjct 21888542 CATACTTGGACATTAAACCCATTTCATATGCTGGGAGTTGTCATTGTATTGGGTGTTGCA 21888601 Query 159876 CTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAA 159935 ||||| | || || ||||| | || ||||| | || | | ||||||||| || Sbjct 21888602 CTACTATGCGCTATTCATGGTGCAACGGTAGAAAGTACTTTATTTGAAGATGGTGATGGT 21888661 Query 159936 GCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGA-CTTACTCTATGGTCAC 159994 | |||||| ||| || ||| | |||| ||| || | | | || || ||| | || Sbjct 21888662 GAAAATACATTTTGTGCTTTTAACCCAACCCAACCCGAAAAAAACCTATTCAATGATTAC 21888721 Query 159995 TGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTT-TCTAACAAGCGGTGGCTTC 160053 || || ||||| ||||| || ||||| || ||| ||| ||||| |||| ||| | | Sbjct 21888722 TGTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTCTCTAATAAGCATTGGTTAC 21888781 Query 160054 ATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTG 160113 |||| || ||||||||||| || || | || | || | | |||| || ||| Sbjct 21888782 ATTTATTTATGTTGTTTGTACCAGTAACTCGTTTATGAATGAGTGTTCTTGGGATAGTTG 21888841 Query 160114 G-CCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAA 160172 | | | || | || || |||||||| |||||||| |||||| ||| | ||| || Sbjct 21888842 GTTCGTCCT-TGAACCTACGTGCTTATGATTTCGTTTCTCAAGAAATCTGTGCAATAG-- 21888898 Query 160173 GATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCA 160232 |||| |||| || ||||| ||||| || | || |||||||| | |||||| Sbjct 21888899 --------ATTTAAGACTTTATACACTAAAAATATTTTCTTAAACGAAGGTATTCGTGCA 21888950 Query 160233 TGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGT 160285 ||| || || || |||| | |||||||||||||| |||| ||||| || Sbjct 21888951 TGGATGACAACTCAAAATCAGTCTCATGAAAACTTTATATTCCTTGAAGAGGT 21889003 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 158740 AGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTG 158799 ||| ||| ||||||||| || || ||||| |||| ||| |||| || |||||| || Sbjct 31674082 AGATGATGCATACATTCTTGATGCTGCAGAGGAAGAAGGCATTGACCTTCCTTACTCATG 31674141 Query 158800 TCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAG 158859 | |||||| |||||||||||||||| || ||| |||| ||| || || ||| Sbjct 31674142 CAGGGCTGGTTCTTGCTCTTCATGTGCTGGCAAAGTTGTGGGTGGCCAAGTGGACCAGTC 31674201 Query 158860 TGATCAGTCGTTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGC 158919 |||| ||| | || || || || |||| | ||| |||||||| || ||||| || Sbjct 31674202 TGATGGTAACTTCCTTGATGACGACCAAATTGAACAAGGCTTTGTTCTCACCTGTGTTGC 31674261 Query 158920 ATATCCAACATCTGATTGTGTTGTTGTTACTGATCAAGAGGAGAACCTC 158968 ||||| || |||||| |||| |||| || | | |||||| | ||| Sbjct 31674262 TTATCCCACTTCTGATGTTGTTATTGTCACCCACAAGGAGGAGGAGCTC 31674310 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 158740 AGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTG 158799 ||| ||| ||||||||| || || ||||| |||| ||| |||| || |||||| || Sbjct 31665046 AGATGATGCATACATTCTTGATGCTGCAGAGGAAGAAGGCATTGACCTTCCTTACTCATG 31665105 Query 158800 TCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAG 158859 | |||||| |||||||||||||||| || ||| |||| ||| || || ||| Sbjct 31665106 CAGGGCTGGTTCTTGCTCTTCATGTGCTGGCAAAGTTGTGGGTGGCCAAGTGGACCAGTC 31665165 Query 158860 TGATCAGTCGTTCTTAGACGATGATCAGATTGCAGC-AGGATTTGTTCTTACGTGTGTAG 158918 |||| ||| | || || || || |||| ||| ||| |||||||| || || || | Sbjct 31665166 TGATGGTAACTTCCTTGATGACGACCAAATTG-AGCAAGGCTTTGTTCTCACCTGCGTTG 31665224 Query 158919 CATATCCAACATCTGATTGTGTTGTTGTTACTGATCAAGAGGAGAACCTC 158968 | ||||| || |||||| |||| |||| ||| | | |||||| | ||| Sbjct 31665225 CTTATCCCACTTCTGATGTTGTTATTGTCACTCACAAGGAGGAGGAGCTC 31665274 >seq7 Length=51758522 Score = 145 bits (160), Expect = 8e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 157907 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 157966 |||||||| ||||| || |||||| | ||| | |||||||| || ||||| ||| Sbjct 47750129 TACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTT 47750188 Query 157967 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158026 |||||||| ||||| || || || || ||||||| ||| | |||||||| | |||||| Sbjct 47750189 GCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAA 47750248 Query 158027 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158086 || || || |||| ||||||| | || || ||||||||||| || | ||| ||||| Sbjct 47750249 GGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGTA 47750308 Query 158087 TTCCAAGCAGAACACAACATCCTTATGCACCCGTT 158121 || || || || || || || |||||||| || || Sbjct 47750309 TTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq2 Length=49040938 Score = 145 bits (160), Expect = 8e-30 Identities = 246/353 (70%), Gaps = 15/353 (4%) Strand=Plus/Plus Query 159961 CAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 160020 |||| |||| | || ||||| || ||||| ||| || ||||| ||||| || |||| Sbjct 27893012 CAACCCAAGCTTAAGAAACTTATTCAATGGTA--TGCTAATCGCTTTTGGTCCCAAATCT 27893069 Query 160021 TCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTA 160080 | || |||| ||||| || | |||||||| ||||| ||||| || || | Sbjct 27893070 TTGGGGTTGCTTTTTCCAATTA----------CATTTCTTTATGTTATTTGTACCAGTAA 27893119 Query 160081 TGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTT-CGTGCTTAC 160139 | ||| | |||| || || | || | || || ||| | ||| |||||||| Sbjct 27893120 TTGGTTTATGGATGAGTGCTCTTAGGATAGTCGGTTAGGC-CTTGACCTTACGTGCTTAT 27893178 Query 160140 GATTTCGTAAGTCAAGAGATCA-GAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACAC 160198 |||||||| |||||| || | ||||| |||||||| |||||||| | || ||||| Sbjct 27893179 GATTTCGTTTCTCAAGAAATTTTGCGCAGCGGAAGATCCTGAATTTGATATTTTATACAC 27893238 Query 160199 CAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCA 160258 |||||| || || || |||||||| | |||| ||| | ||| || ||||| | || Sbjct 27893239 CAAAAATATTCTCTTAAACGAAGGTATTCGTGTGTGGATTGCAGCTCAAGATCAGCTTCA 27893298 Query 160259 TGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 ||||||| |||| ||||| || || || | || | || ||||| ||||||| Sbjct 27893299 TGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGTAACGCTCTTTAAT 27893351 >seq1 Length=52205531 Score = 134 bits (148), Expect = 2e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 160002 CGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTC 160061 ||||| ||||| || ||||| || |||| ||||| || || || ||| | |||||||| Sbjct 38350081 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 38350140 Query 160062 ATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCT 160121 ||||| ||||| || || | ||| | |||| || |||| | | || | || Sbjct 38350141 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCC 38350200 Query 160122 CTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAA 160181 || || | |||||||| |||||||| |||||| ||| | ||||| |||||||| ||| Sbjct 38350201 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 38350260 Query 160182 TTTGAGACCTTCTACACCAAAAACATCCTATT 160213 |||||||| |||||||||||||| || || || Sbjct 38350261 TTTGAGACTTTCTACACCAAAAATATTCTCTT 38350292 >seq8 Length=59662532 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 158427 GTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAG 158486 |||| || |||||||| ||| | ||||| |||| |||||||| | || |||||||| | Sbjct 31293220 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTG 31293279 Query 158487 ATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACT 158546 || | | ||||| ||| |||||||||||||| |||||||| ||||| || || || | Sbjct 31293280 ATATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAATT 31293339 Query 158547 TCCCACTCGACCTTGCTGC 158565 |||| || || || ||||| Sbjct 31293340 TCCCTCTAGATCTAGCTGC 31293358 Score = 109 bits (120), Expect = 6e-19 Identities = 180/260 (69%), Gaps = 11/260 (4%) Strand=Plus/Minus Query 159982 ACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACA 160041 |||| ||||| ||||| || ||||| ||||| || ||||| || |||| ||| | Sbjct 1232873 ACTCAATGGTTACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTCAT---- 1232818 Query 160042 AGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTA 160101 ||| | |||||||| ||||| ||||| || || | ||| | || | || Sbjct 1232817 -----TGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGAATGAGTGCTC 1232763 Query 160102 TTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCA 160161 |||| | | || | || | || | ||||||| |||||||| |||||| ||| Sbjct 1232762 TTGGGGTGGTCGGTTTGGCCGTGAACTTATGTGCTTATGATTTCGTTTCTCAAGAAATCC 1232703 Query 160162 GAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAG 160221 | ||||| ||| |||| ||||||||||| ||| ||| |||||| || || || || ||| Sbjct 1232702 GCGCAGCGGAATATCCTGAATTTGAGACTTTCAACAACAAAAATATTCTCTTAAA--AAG 1232645 Query 160222 GACTACGTGCATGGTTGGCA 160241 | | ||||| ||| ||||| Sbjct 1232644 GTATTCGTGCGTGGATGGCA 1232625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548369546886560