Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3 116 3e-21 >seq3 Length=52284309 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| ||||| ||||| |||||||||||| | || |||| | Sbjct 30284228 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACCATTACCTTGGAGGTGGAGAGTTCA 30284287 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| |||||| || || || || | ||| || || Sbjct 30284288 GACACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 30284347 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || |||||||| || |||| ||||| | |||||||| || Sbjct 30284348 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTATAAT 30284407 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || ||||||||||| ||||| |||| || || || || || |||| Sbjct 30284408 ATCCAGAAAGAATCTACTCTGCACTTGGTTTTGAGGCTTCGTGGTGGAA 30284456 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| ||||| ||||| |||||||||||| | || |||| | Sbjct 30378408 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACCATTACCTTGGAGGTGGAGAGTTCA 30378467 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| |||||| ||||| || || | ||| || || Sbjct 30378468 GATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAG 30378527 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || |||||||| || |||| ||||| |||||||||| || Sbjct 30378528 CAGAGGCTTATCTTTGCTGGGAAACAGCTTGAAGATGGAAGAACCCTGGCGGATTATAAT 30378587 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || |||||| | || || || || || || || Sbjct 30378588 ATTCAGAAGGAGTCCACTTTGCACTTAGTTTTGAGGCTTCGTGGTGG 30378634 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || |||||||| || || ||||| ||| | || |||| | Sbjct 30274585 ATGCAAATTTTTGTGAAGACTTTAACTGGAAAGACCATAACCTTGGAGGTGGAGAGTTCA 30274644 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || |||||| ||||| || ||| | || |||||| Sbjct 30274645 GATACCATTGATAATGTCAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCGGATCAG 30274704 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||||| ||| ||||||||||| || || | ||||| | |||||||| ||| Sbjct 30274705 CAGAGGCTTATTTTTGCTGGTAAACAGCTTGAAGACGGTAGAACCCTTGCGGATTATAAC 30274764 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || ||||| || ||||| |||| || || || || || || Sbjct 30274765 ATCCAGAAGGAATCCACTCTGCACTTGGTTTTGAGGCTTCGGGGTGG 30274811 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || |||||||| || || ||||| ||| | || |||| | Sbjct 30309787 ATGCAGATTTTTGTGAAGACTTTAACTGGAAAGACCATAACCTTGGAGGTGGAGAGTTCA 30309846 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| ||||| ||||| || ||| | || |||||| Sbjct 30309847 GATACCATTGATAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAG 30309906 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||||| ||| ||||||||||| || || | ||||| | |||||||| ||| Sbjct 30309907 CAGAGGCTTATTTTTGCTGGTAAACAGCTTGAAGACGGTAGAACCCTTGCGGATTATAAC 30309966 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || ||||| || ||||| |||| || || || || || || Sbjct 30309967 ATCCAGAAGGAATCCACTCTGCACTTGGTTTTGAGGCTTCGTGGTGG 30310013 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG--AGC-C 110328 ||||||||||||||| || ||| | || || || ||||||||| | || || ||| | Sbjct 30378863 AATGCAAATATTTGTGAAGACTCTGACAGGAAAGACCATTACCTTGGAGGTGGAAAGCTC 30378922 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | ||||| | | | | || ||| |||||| ||||| |||||| | || || Sbjct 30378923 T---GATACAATTGACAATGTGAAAGCAAAGATTCAGGACAAGGAAGGCATACCACCAGA 30378979 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 |||||| || ||||| | ||| || || |||||||| |||| | || | || ||||| Sbjct 30378980 TCAACAGAGGCTTATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGTACCCTTGCTGATTA 30379039 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || ||||| || | ||| ||||||| |||| || || || Sbjct 30379040 TAATATCCAGAAGGAATCCACTCTTCACTTGGTGTTGCGACTTCGTGGTGG 30379090 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||||| || || || ||||| ||| | || |||| | Sbjct 30274357 ATGCAGATTTTTGTGAAGACTTTGACTGGAAAGACCATAACCTTGGAGGTGGAGAGTTCA 30274416 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | ||||| ||||| ||||| || ||| | || |||||| Sbjct 30274417 GATACCATTGATAATGTAAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAG 30274476 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| ||||||||||| ||||||| ||||| | || ||||| || Sbjct 30274477 CAGAGGCTGATATTTGCTGGTAAACAGCTTGAGGATGGAAGAACCCTTGCCGATTATAAT 30274536 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACT 110490 ||||| | ||||| || ||||| |||| || || || Sbjct 30274537 ATTCAGATGGAATCCACCCTGCACTTGGTTTTGAGGCT 30274574 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| |||||||| || ||| | || || |||||||||||| | || |||| Sbjct 30284683 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTGGAGGTGGAGAGCTC 30284742 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || ||| |||||| |||||||||||| | || ||||| Sbjct 30284743 TGATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAAGAAGGCATCCCACCAGATCA 30284802 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||||| ||| || ||||| |||| |||| | || |||| || ||||| Sbjct 30284803 GCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAA 30284862 Query 110452 CATTCAAAAAGAATCTAC 110469 ||||| || ||||| || Sbjct 30284863 TATTCAGAAGGAATCCAC 30284880 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| |||||||| || ||| | || || || ||||||||| | || |||| Sbjct 30310242 AATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTGGAGAGCTC 30310301 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || ||| |||||| ||||| || ||| | || ||||| Sbjct 30310302 TGATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCA 30310361 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||||| ||| |||||||| |||| |||| | || |||| || ||||| Sbjct 30310362 GCAGAGGCTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAA 30310421 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| |||||||| || Sbjct 30310422 CATTCAGAAAGAATCCAC 30310439 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| |||||||| || ||| | || || |||||||||||| | || |||| Sbjct 30314981 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTGGAGGTGGAGAGCTC 30315040 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || ||| |||||| ||||| || ||| | || ||||| Sbjct 30315041 TGATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCATCCCACCAGATCA 30315100 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||||| ||| || ||||| |||| |||| | || |||| || ||||| Sbjct 30315101 GCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAA 30315160 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| || ||||| || Sbjct 30315161 CATTCAGAAGGAATCCAC 30315178 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || || || || ||||||||||| | || || | | Sbjct 30378636 ATGCAAATTTTTGTCAAGACCTTGACGGGAAAAACCATTACTTTGGAGGTTGAAAGTTCC 30378695 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | ||||| ||||| |||||||| || | || || || Sbjct 30378696 GATACCATTGATAATGTAAAGGCAAAGATACAGGACAAAGAGGGGATTCCACCAGACCAG 30378755 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | ||| || || |||||||| |||| | || | || ||||| ||| Sbjct 30378756 CAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCTGATTATAAC 30378815 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || ||||| || | || ||||||| || || || || |||| Sbjct 30378816 ATCCAGAAGGAATCCACTCTTCATTTGGTGTTGAGGCTTCGTGGTGGAA 30378864 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| |||||||| || ||| | || || || ||||||||| | || |||| Sbjct 30275039 AATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTGGAGAGCTC 30275098 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || ||| |||||| ||||| || ||| | || ||||| Sbjct 30275099 TGATACAATTGATAATGTGAAAGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGATCA 30275158 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||||| ||| || ||||| |||| |||| | || |||| || ||||| Sbjct 30275159 GCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAA 30275218 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| || ||||| || Sbjct 30275219 CATTCAGAAGGAATCCAC 30275236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412838037693044