Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq6 196 6e-45 seq7 149 8e-31 seq2 129 7e-25 seq1 129 7e-25 seq11 120 4e-22 seq4 104 3e-17 seq8 96.9 4e-15 >seq6 Length=31977256 Score = 196 bits (216), Expect = 6e-45 Identities = 480/717 (67%), Gaps = 23/717 (3%) Strand=Plus/Plus Query 179227 TGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTT 179286 |||| ||| || | |||||| ||||| || | |||| | | |||| | | ||| | | Sbjct 21888305 TGGACTTTTGTTGTTCTCCATGGTGCTTTTGGATTAATACGTTCCATGTTACATCAATCT 21888364 Query 179287 GAACTGGCACG-TCTCATCGGTATCCGTCCTTACAAT---GCGATTGCTTTTACTGGTCC 179342 ||||| || | | | || | | | ||||| ||| | ||||| || | ||||| Sbjct 21888365 GAACTTGCTCAATTTTTTCAAT-TACAACCTTATAATAATGTAATTGCATTCTCAGGTCC 21888423 Query 179343 TATTGCCGTATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTT 179402 |||| | || ||| |||||| || || || ||||| || || | |||| ||||| Sbjct 21888424 AATTGTTATTTTTGTTTATGTATTCCTTATTTATCCACTGGGTCAGTTTGGTTGATTCTT 21888483 Query 179403 TGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCA 179462 ||| || ||| || || || | ||| | || | | || || ||| | || || Sbjct 21888484 TGCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATCATCATATTTTTCCAAAGATTTCA 21888543 Query 179463 CAACTGGACACTCAACCCCTTTCACATGATGGGAGTTG-CAG-GTATCCTGGGTGGTGCT 179520 | |||||| | ||||| ||||| ||| ||||||||| || |||| |||||| ||| Sbjct 21888544 TACTTGGACATTAAACCCATTTCATATGCTGGGAGTTGTCATTGTAT--TGGGTGTTGCA 21888601 Query 179521 CTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAA 179580 || || | ||||||||||| | ||| ||||| | ||| || | ||||||||| || Sbjct 21888602 CTACTATGCGCTATTCATGGTGCAACGGTAGAAAGTACTTTATTTGAAGATGGTGATGGT 21888661 Query 179581 GCAAACACATTTAAAGCGTTCGACTCTACGCAA-GAGGAGGAGACCTATTCTATGGTTAC 179639 | ||| |||||| || || || | || ||| | | | |||||||| ||| |||| Sbjct 21888662 GAAAATACATTTTGTGCTTTTAACCCAACCCAACCCGAAAAAAACCTATTCAATGATTAC 21888721 Query 179640 AGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGC-AATAAGCGTTGGTTCC 179698 | || || |||||||| || ||||| |||||| ||| | ||||||| |||||| | Sbjct 21888722 TGTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTCTCTAATAAGCATTGGTTAC 21888781 Query 179699 ACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTG 179758 | || |||| | ||||||| || || | || | || | | | |||| || | | Sbjct 21888782 ATTTATTTATGTTGTTTGTACCAGTAACTCGTTTATGAATGAGTGTTCTTGGGAT-AGTT 21888840 Query 179759 GGCTAGCTCTT-AATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAA 179817 || | | ||| || || |||||||||||||| || |||||| ||| | ||| ||| Sbjct 21888841 GGTTCGTCCTTGAACCTACGTGCTTATGATTTCGTTTCTCAAGAAATCTGTGCAATAGA- 21888899 Query 179818 GATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCT 179877 || |||| || || || || || ||| | | || ||||| | ||||| Sbjct 21888900 ---------TTTAAGACTTTATACACTAAAAATATTTTCTTAAACGAAGGTATTCGTGCA 21888950 Query 179878 TGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTA 179934 ||| || || || |||| | ||||||||||| || |||| ||||| || ||| Sbjct 21888951 TGGATGACAACTCAAAATCAGTCTCATGAAAACTTTATATTCCTTGAAGAGGTTCTA 21889007 Score = 120 bits (132), Expect = 4e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138529 GATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGT 138588 |||||| ||||| ||||||||||| || |||| ||| ||||| ||||| ||||| || Sbjct 31665047 GATGATGCATACATTCTTGATGCTGCAGAGGAAGAAGGCATTGACCTTCCTTACTCATGC 31665106 Query 138589 CGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCT 138648 | |||||| | || ||| | |||||||| ||| | || | || || || |||||| Sbjct 31665107 AGGGCTGGTTCTTGCTCTTCATGTGCTGGCAAAGTTGTGGGTGGCCAAGTGGACCAGTCT 31665166 Query 138649 GACCAGTCTTTCCTTGATGATGACCAAATTGCAGC-AGGATTTATCATGACTTGCGTAGC 138707 || ||||||||||| |||||||||| ||| ||| ||| | | || ||||| || Sbjct 31665167 GATGGTAACTTCCTTGATGACGACCAAATTG-AGCAAGGCTTTGTTCTCACCTGCGTTGC 31665225 Query 138708 ATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 || ||||| || ||| | | |||| ||| | || ||||| || || Sbjct 31665226 TTATCCCACTTCTGATGTTGTTATTGTCACTCACAAGGAGGAGGAGCT 31665273 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138529 GATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGT 138588 |||||| ||||| ||||||||||| || |||| ||| ||||| ||||| ||||| || Sbjct 31674083 GATGATGCATACATTCTTGATGCTGCAGAGGAAGAAGGCATTGACCTTCCTTACTCATGC 31674142 Query 138589 CGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCT 138648 | |||||| | || ||| | |||||||| ||| | || | || || || |||||| Sbjct 31674143 AGGGCTGGTTCTTGCTCTTCATGTGCTGGCAAAGTTGTGGGTGGCCAAGTGGACCAGTCT 31674202 Query 138649 GACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCA 138708 || ||||||||||| |||||||||| | ||| ||| | | || || || || Sbjct 31674203 GATGGTAACTTCCTTGATGACGACCAAATTGAACAAGGCTTTGTTCTCACCTGTGTTGCT 31674262 Query 138709 TACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 || ||||| || ||| | | |||| || | || ||||| || || Sbjct 31674263 TATCCCACTTCTGATGTTGTTATTGTCACCCACAAGGAGGAGGAGCT 31674309 Score = 91.5 bits (100), Expect = 2e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 138508 GAACAAATCTTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGT 138567 ||| ||| ||||| ||| | ||||| | ||| ||||||||||| || |||| ||| Sbjct 31670488 GAAAAAACCTTTGTCTGCTCAGATGAAACCTTCATTCTTGATGCTGCAGAAGAAGTAGGC 31670547 Query 138568 ATTGATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTT 138627 |||| ||||||||||| || | |||||||| || ||| ||||| ||| ||| | || Sbjct 31670548 CTTGACCTTCCCTACTCATGCAGGGCTGGTGCCTGCTCTTCCTGTCTTGGCAAAGTTGTG 31670607 Query 138628 GAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGA 138687 | || || || ||||| || | ||| ||||| || ||||| | |||| Sbjct 31670608 AATGGCCAAGTGGACCAGTCAGAGGGTAGCTACCTAGATGACGATCAAATCGATCAAGGA 31670667 Query 138688 TTTATCATGACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAG 138747 | | | | || || | || |||||||| || ||| | | || | || | || ||| Sbjct 31670668 TATGTTCTTACATGTATTGCTTACCCCACCTCTGATGTTGTTATCCAGACCCACAAGGAG 31670727 Query 138748 GACGAACT 138755 |||||||| Sbjct 31670728 GACGAACT 31670735 >seq7 Length=51758522 Score = 149 bits (164), Expect = 8e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 177885 TATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTT 177944 || ||||| ||||| || |||||| | ||||| |||||||| || ||||| |||| Sbjct 47750129 TACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTT 47750188 Query 177945 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCA 178003 ||||| || || ||||||||||| || | || || ||||| | |||||||| | ||||| Sbjct 47750189 GCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGT-TTTCTTGATCTATCCTATTGGTCA 47750247 Query 178004 AGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 178063 ||| || || |||| ||||||| | || || ||||||||||| || | ||| |||| Sbjct 47750248 AGGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGT 47750307 Query 178064 ATTCCAAGCAGAACACAATATCCTTATGCACCCGTT 178099 ||| || || || || ||||| |||||||| || || Sbjct 47750308 ATTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq2 Length=49040938 Score = 129 bits (142), Expect = 7e-25 Identities = 231/334 (69%), Gaps = 15/334 (4%) Strand=Plus/Plus Query 179620 GAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTT 179679 || || ||||| ||||| || || || |||||||| || ||||| |||||| | ||| Sbjct 27893026 GAAACTTATTCAATGGTAT--GCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTT 27893083 Query 179680 AGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTC 179739 |||| | || ||||||| | | ||||| || || || ||| | ||| | Sbjct 27893084 TCCAATTA----------CATTTCTTTATGTTATTTGTACCAGTAATTGGTTTATGGATG 27893133 Query 179740 TCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTT-CGTGCTTATGATTTTGTGAGTCA 179798 | || || | || | | || ||| ||| | ||| |||||||||||||| || ||| Sbjct 27893134 AGTGCTCTTAGGAT-AGTCGGTTAGGCCTTGACCTTACGTGCTTATGATTTCGTTTCTCA 27893192 Query 179799 AGAGATCA-GAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTC 179857 ||| || | ||||| ||||||||||| || || | || || || || || ||||| Sbjct 27893193 AGAAATTTTGCGCAGCGGAAGATCCTGAATTTGATATTTTATACACCAAAAATATTCTCT 27893252 Query 179858 TGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCT 179917 | || ||||| | |||| ||| | ||| || ||||| | ||||||||| | || | Sbjct 27893253 TAAACGAAGGTATTCGTGTGTGGATTGCAGCTCAAGATCAGCTTCATGAAAACCTTATAT 27893312 Query 179918 TCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 |||| || || || ||||| |||||||||| || Sbjct 27893313 TCCCTGAGGAGGTTCTACCACGTGGTAACGCTCT 27893346 >seq1 Length=52205531 Score = 129 bits (142), Expect = 7e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 179647 CGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTT 179706 || |||||||| || ||||| |||||| | ||| |||||| |||||||| || |||||| Sbjct 38350081 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 38350140 Query 179707 AAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCT 179766 | | | ||||| || || | ||| | ||| | | || |||| | | || | || Sbjct 38350141 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCC 38350200 Query 179767 CTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAG 179826 || || | |||||||||||||| || |||||| ||| | ||||| ||||||||||| Sbjct 38350201 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 38350260 Query 179827 TTCGAGACGTTCTATACAAAGAACATTCT 179855 || ||||| ||||| || || || ||||| Sbjct 38350261 TTTGAGACTTTCTACACCAAAAATATTCT 38350289 >seq11 Length=50367376 Score = 120 bits (132), Expect = 4e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 138529 GATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGT 138588 |||||| || ||||| ||||| || || || || || |||| ||||| |||||||| Sbjct 9650241 GATGATACATATATCCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCCTGC 9650300 Query 138589 CGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCT 138648 || || || || || |||||||||||||| || | |||| || | || ||||||||| Sbjct 9650301 CGCGCGGGAGCTTGCTCTACCTGTGCTGGGAAGATTGTTGCTGGCTCAGTGGATCAGTCT 9650360 Query 138649 GACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCA 138708 || || ||||||||||| ||||| | | ||| ||| | | || || | | Sbjct 9650361 GATGGCTCATTCCTTGATGACAACCAACTGAAGGAAGGCTTTGTACTTACCTGTATCTCC 9650420 Query 138709 TACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGA 138762 || || || | |||||| ||||||||||| | || || | ||||| |||||| Sbjct 9650421 TATCCAACTGCAGATTGTGTAATTGAAACTCACAAGGAAGGAGAACTCTACTGA 9650474 >seq4 Length=45960019 Score = 104 bits (114), Expect = 3e-17 Identities = 140/191 (73%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 179763 AGCTCTTAATCTT-CGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATC 179821 ||||| | | ||| |||||||||||||| || |||||| ||| | ||| | ||||| Sbjct 43482218 AGCTCCTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGTGCATGA-AAGATT 43482276 Query 179822 CTGAGTTCGAGACGTTCTATAC-AAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGG 179880 |||| || || || || || || ||| || ||||| | || ||||| | ||||| ||| Sbjct 43482277 CTGAATTTGATACTTTGTACACAAAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGG 43482336 Query 179881 TTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGT 179940 ||||| | ||||| || ||||||||| | || ||||| || || || ||||| || Sbjct 43482337 ATGGCAATTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGT 43482396 Query 179941 GGTAACGCACT 179951 || ||||| || Sbjct 43482397 GGAAACGCTCT 43482407 >seq8 Length=59662532 Score = 96.9 bits (106), Expect = 4e-15 Identities = 177/258 (69%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 179629 TCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAG 179688 || |||||||| || || || |||||||| || ||||| |||||| | ||| Sbjct 1232871 TCAATGGTTACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTT--------- 1232821 Query 179689 CGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATT 179748 | |||||| || ||||||| | | ||||| || || | ||| | || | | || || Sbjct 1232820 CATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGAATGAGTGCTCTT 1232761 Query 179749 GGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGA 179808 || | | || | || | || | ||||||||||||| || |||||| ||| | Sbjct 1232760 GGGGTGGTCGGTTTGGCCGTGAACTTATGTGCTTATGATTTCGTTTCTCAAGAAATCCGC 1232701 Query 179809 GCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGA 179868 ||||| ||| ||||||| || ||||| ||| | | || || |||| ||| || |||| Sbjct 1232700 GCAGCGGAATATCCTGAATTTGAGACTTTCAACAACAAAAATATTC-TCTTAA-AAAGGT 1232643 Query 179869 CTACGTGCTTGGTTGGCA 179886 | ||||| ||| ||||| Sbjct 1232642 ATTCGTGCGTGGATGGCA 1232625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605661839845280