Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 seq2 98.7 7e-16 seq9 84.2 1e-11 seq7 84.2 1e-11 seq5 84.2 1e-11 >seq3 Length=52284309 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | || | ||| | || |||||| || ||||| || |||||||||| Sbjct 30378178 CCACCCCTGAGGCGAAGCACGAGGTGGAGAGTGGATTCCTTTTGGATATTGTAATCGGCA 30378119 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | ||| || || || ||||||| | ||||||||| | || Sbjct 30378118 AGAGTGCGACCATCCTCGAGTTGCTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAGGG 30378059 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || || | | |||| || | |||||| |||||||| Sbjct 30378058 ATACCTTCTTTGTCCTGGATCTT-AGCCTTGACATTATCAATGGTGTCAGAGGATTCCAC 30378000 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| ||||| || ||||| |||||||||||||| Sbjct 30377999 CTCGAGGGTGATAGTTTTGCCTGTCAAAGTTTTCACAAAGATCTGCAT 30377952 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||||||| | ||||| || || ||| ||| || || || || ||||||| Sbjct 30274356 ACCACCTCTCAAACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGAATATTATAATCGGC 30274297 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || || | |||||| || |||||||||| | |||||||||| | || Sbjct 30274296 AAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCTGGAGG 30274237 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| |||||||| || || | || |||| || | |||||| ||||| | Sbjct 30274236 GATACCCTCTTTGTCTTGGATCTT-AGCTTTGACATTATCAATGGTGTCAGACGATTCTA 30274178 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || || || || || ||||| || || |||||||| Sbjct 30274177 CCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCAT 30274129 >seq2 Length=49040938 Score = 98.7 bits (108), Expect = 7e-16 Identities = 166/238 (70%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | || || ||| ||| || || |||||||| |||| Sbjct 7435727 CACCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 7435668 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| ||||| |||| || | || |||||||| || || | |||||||||||| ||| Sbjct 7435667 CGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAATATGAGACGCTGCTGATCCGGCG 7435608 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || | | |||| ||| | |||||| || ||| Sbjct 7435607 GGATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTGTCGATGGTGTCCGAAGACTCC 7435549 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTG 33757 || |||| ||||| ||||| || || | ||||| || || |||||||| | || || Sbjct 7435548 ACCTCAAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCATCGCTGCTG 7435491 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | || || ||| ||| || || |||||||| |||| Sbjct 7451137 CACCACCGCGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 7451078 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| ||||| |||| || | || |||||||| || || | |||||||||||| | | Sbjct 7451077 CGAGGGTGCGACCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGTG 7451018 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || | | |||| ||| | |||||| || ||| Sbjct 7451017 GGATTCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTGTCGATGGTGTCTGAAGACTCC 7450959 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || | ||||| || || |||||||| Sbjct 7450958 ACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTCACGAATATCTGCAT 7450909 >seq9 Length=37469608 Score = 84.2 bits (92), Expect = 1e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 || ||||||||||||| ||| || ||||| |||| |||| |||||||||||| ||| Sbjct 9374270 GCTCACCTTCTTTGTCCTGAATCTT-TGTTTTGACATTGTCAATGGTGTCGCTTGACTCC 9374212 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || | ||||| || ||||||||||| Sbjct 9374211 ACCTCAAGGGTGATGGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCAT 9374162 >seq7 Length=51758522 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || ||||| ||| || || ||||| || |||| Sbjct 4237209 ACCACCACGAAGACGCAACACCAAGTGGAGAGTTGACTCCTTCTGGATGTTATAGTCGGC 4237150 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || |||| |||||||| || || ||||| | |||||| || | || Sbjct 4237149 GAGGGTCCTTCCATCCTCCAGCTGTTTTCCAGCGAAGATCAACCTCTGCTGGTCCGGGGG 4237090 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | || || ||||| || || |||| | | ||| | |||||| ||| | Sbjct 4237089 TATTCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAGCTC---T 4237034 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | ||||| || || || || | || || |||||||||||||| Sbjct 4237033 CCACCTCGAGGGTGATGGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCAT 4236982 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/207 (70%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| ||| || || ||||||||||| | || || | | | || ||||| || Sbjct 4237640 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTTCCATCCTCCAACTGC 4237581 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| ||||| | |||||| || | || | || || ||||| ||||||| Sbjct 4237580 TTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATTTTC 4237521 Query 33667 TGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722 ||| |||| ||| | |||||| ||| ||||| |||| || || || ||||| Sbjct 4237520 GCCTTC-ACATTGTCGATGGTGTCAGAGCT---CTCCACCTCAAGGGTAATGGTCTTACC 4237465 Query 33723 TGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || |||||||| Sbjct 4237464 CGTAAGGGTCTTGACGAAAATCTGCAT 4237438 >seq5 Length=40819286 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || ||||| || || || || ||||||||||| ||||| | |||||||| | || Sbjct 8292521 AAAACCAAGTGAAGGGTTGATTCCTTTTGTATGTTATAATCAGCAAGTGTGCGACCATCT 8292580 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 |||| ||| || || ||||||||||| | ||||||||| | || | |||||| ||||| Sbjct 8292581 TCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAGGGATACCTTCCTTGTC 8292639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701163695360