Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq6 280 2e-70 seq2 181 1e-40 seq9 159 4e-34 seq7 138 1e-27 seq1 134 2e-26 seq8 120 3e-22 seq4 120 3e-22 >seq6 Length=31977256 Score = 280 bits (310), Expect = 2e-70 Identities = 498/722 (69%), Gaps = 21/722 (3%) Strand=Plus/Plus Query 159661 GGGATTTGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGG 159720 || || ||| | ||||||| |||||| ||||| || | | ||| ||| ||| ||| Sbjct 21888299 GGTATGTGGACTTTTGTTGTTCTCCATGGTGCTTTTGGATTAATACGTTCCATGTTACAT 21888358 Query 159721 CAATTTGAAATTGCTCGTCTAGTTGGTATCCGTCCTTACAATGCT---ATTGCGTTCTCT 159777 |||| |||| |||||| | || | | ||||| ||| | ||||| ||||| Sbjct 21888359 CAATCTGAACTTGCTCAATTTTTTCAATTACAACCTTATAATAATGTAATTGCATTCTCA 21888418 Query 159778 GGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGG 159837 ||||| |||| | ||||||| ||||||||||| |||||||||||||||| | || Sbjct 21888419 GGTCCAATTGTTATTTTTGTTTATGTATTCCTTATTTATCCACTGGGTCAGTTTGGTTGA 21888478 Query 159838 TTCTTTGCACCTAGTTTCGGGGTAGCAGC-AATCTTTAGAT--TCCTGTTGTTCCTTCAG 159894 |||||||| |||||||| | |||||| ||| || | || || | || ||| || Sbjct 21888479 TTCTTTGCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATCATCATATTTTTC---CAA 21888535 Query 159895 GGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGT 159954 | || || | ||||| | ||||| || |||||| ||||||||| | || | ||| Sbjct 21888536 AGATTTCATACTTGGACATTAAACCCATTTCATATGCTGGGAGTTGTCATTGTATTGGGT 21888595 Query 159955 GGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGA 160014 | ||||| | || || || |||||||| || ||||| | || || ||||||||||| Sbjct 21888596 GTTGCACTACTATGCGCTATTCATGGTGCAACGGTAGAAAGTACTTTATTTGAAGATGGT 21888655 Query 160015 GAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAG-AAGAGACTTATTCTAT 160073 || | ||| |||||| || ||| | || || ||| | || | || ||||| || Sbjct 21888656 GATGGTGAAAATACATTTTGTGCTTTTAACCCAACCCAACCCGAAAAAAACCTATTCAAT 21888715 Query 160074 GGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTT-TCTAACAAGCGGT 160132 | | |||| || ||||| ||||| || ||||| || |||| ||| ||||| |||| | Sbjct 21888716 GATTACTGTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTCTCTAATAAGCATT 21888775 Query 160133 GGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCA 160192 || | ||||| || ||||||||||| || || | || |||| | | |||| | Sbjct 21888776 GGTTACATTTATTTATGTTGTTTGTACCAGTAACTCGTTTATGAATGAGTGTTCTTGGGA 21888835 Query 160193 TTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAG 160252 | ||||| | || ||||| |||||||| |||||||| ||| || || | ||| Sbjct 21888836 TAGTTGGTTCGTCCTTGAACCTACGTGCTTATGATTTCGTTTCTCAAGAAATCTGTGCAA 21888895 Query 160253 CAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTC 160312 || |||| |||| || ||||| || || || | || || ||||| ||| Sbjct 21888896 TAG----------ATTTAAGACTTTATACACTAAAAATATTTTCTTAAACGAAGGTATTC 21888945 Query 160313 GTGCTTGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTAC 160372 |||| |||||| || || |||| | |||||||||||||| |||| ||| || || | Sbjct 21888946 GTGCATGGATGACAACTCAAAATCAGTCTCATGAAAACTTTATATTCCTTGAAGAGGTTC 21889005 Query 160373 TA 160374 || Sbjct 21889006 TA 21889007 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 158844 TACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGT 158903 |||||||| || |||||||| || | ||| |||| || || || || | |||||| Sbjct 31674092 TACATTCTTGATGCTGCAGAGGAAGAAGGCATTGACCTTCCTTACTCATGCAGGGCTGGT 31674151 Query 158904 GCCTGTTCTTCCTGTGCTGGTAAACTTGTCAGCGGAACTGTTGACCAAAGCGATCAGTCA 158963 | || ||||| |||||||| ||| |||| | || || ||||| ||| || | Sbjct 31674152 TCTTGCTCTTCATGTGCTGGCAAAGTTGTGGGTGGCCAAGTGGACCAGTCTGATG-GTAA 31674210 Query 158964 -TTCTTGGATGATGATCAGATTGCAGAAGGATTTATCCTTACGTGTGTATCTTATCCCAC 159022 ||| | ||||| || || |||| | |||| ||| | || || ||||| |||||||||| Sbjct 31674211 CTTCCTTGATGACGACCAAATTGAACAAGGCTTTGTTCTCACCTGTGTTGCTTATCCCAC 31674270 Query 159023 TTCTGAT 159029 ||||||| Sbjct 31674271 TTCTGAT 31674277 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 158844 TACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGT 158903 |||||||| || |||||||| || | ||| |||| || || || || | |||||| Sbjct 31665056 TACATTCTTGATGCTGCAGAGGAAGAAGGCATTGACCTTCCTTACTCATGCAGGGCTGGT 31665115 Query 158904 GCCTGTTCTTCCTGTGCTGGTAAACTTGTCAGCGGAACTGTTGACCAAAGCGATCAGTCA 158963 | || ||||| |||||||| ||| |||| | || || ||||| ||| || | Sbjct 31665116 TCTTGCTCTTCATGTGCTGGCAAAGTTGTGGGTGGCCAAGTGGACCAGTCTGATG-GTAA 31665174 Query 158964 -TTCTTGGATGATGATCAGATTGCAGAAGGATTTATCCTTACGTGTGTATCTTATCCCAC 159022 ||| | ||||| || || |||| |||| ||| | || || || || |||||||||| Sbjct 31665175 CTTCCTTGATGACGACCAAATTGAGCAAGGCTTTGTTCTCACCTGCGTTGCTTATCCCAC 31665234 Query 159023 TTCTGAT 159029 ||||||| Sbjct 31665235 TTCTGAT 31665241 >seq2 Length=49040938 Score = 181 bits (200), Expect = 1e-40 Identities = 253/354 (71%), Gaps = 13/354 (4%) Strand=Plus/Plus Query 160039 TTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCG 160098 ||| | || || |||| |||| |||||||| ||||| ||| || ||||| ||||| Sbjct 27893005 TTTAACCCAACCCAAGCTTAAGAAACTTATTCAATGGTA--TGCTAATCGCTTTTGGTCC 27893062 Query 160099 CAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTG 160158 || ||||| || ||||| ||||| || | ||||| || ||||| ||||| Sbjct 27893063 CAAATCTTTGGGGTTGCTTTTTCCAATTA----------CATTTCTTTATGTTATTTGTA 27893112 Query 160159 CCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGT 160218 || || || ||| |||||| || || | || | ||| || || | | | ||| Sbjct 27893113 CCAGTAATTGGTTTATGGATGAGTGCTCTTAGGATAGTCGGTTAGGCCTTGACCTTACGT 27893172 Query 160219 GCTTACGATTTCGTGAGTCAGGAGATTA-GAGCAGCAGAAGATCCTGAATTTGAGACCTT 160277 ||||| |||||||| ||| || ||| | ||||| ||||||||||||||||| | || Sbjct 27893173 GCTTATGATTTCGTTTCTCAAGAAATTTTGCGCAGCGGAAGATCCTGAATTTGATATTTT 27893232 Query 160278 CTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCA 160337 |||||||| || || || || || ||||| |||||| ||||| ||| || ||||| Sbjct 27893233 ATACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGTGTGGATTGCAGCTCAAGATCA 27893292 Query 160338 ACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 | ||||||||| |||| ||||||||||| || ||||| | |||||||| || Sbjct 27893293 GCTTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGTAACGCTCT 27893346 >seq9 Length=37469608 Score = 159 bits (176), Expect = 4e-34 Identities = 365/547 (67%), Gaps = 2/547 (0%) Strand=Plus/Plus Query 157723 GTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCT 157781 ||| ||||| |||||||||||| || | | ||||| | ||| || || |||| | Sbjct 1917761 GTTTGGTGTTTTGATGATTCCTATTGTGTTAACCACAACT-TTTGTATTTATTATCGCTT 1917819 Query 157782 TCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCA 157841 | ||| ||| || || ||||| | ||| || || | ||| || ||| ||| || || Sbjct 1917820 TTATCGTTGCCCCTCCAGTGGATAATGATGGTATTCACGAGCCTGTTTTTGGATCCCTAC 1917879 Query 157842 TGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCC 157901 | ||||| ||||| ||||| |||||||| | ||| || || || || | | | | Sbjct 1917880 TTTATGGAAACAATATCATTTCTGGTGCGACTATTCATACTTTTGCGGCTATAGATTTGC 1917939 Query 157902 ACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTT 157961 | || || || || ||||||| | | | |||| || || || || |||| ||||||| Sbjct 1917940 ATTTTTATCCTATATGGGAAGTGACTTTTGTTGATGAATGCCTATACAACGACGGTCCTT 1917999 Query 157962 TCCAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGG 158021 |||| | || | || ||| | | | | | ||| ||||| ||||| |||| Sbjct 1918000 ATGAACTAATTGTTCTACATTTCTTACTTAGTGTAGCTTGCTACATGGGTCGTGAATGGG 1918059 Query 158022 AACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCG 158081 |||| | ||||| ||||||| | ||||| ||| |||||||| |||| | | Sbjct 1918060 AACTTAACTTTCGTTTGGGTATGCATCATTGGATTGCTGTTGCATATTCAACTCCTGATG 1918119 Query 158082 CTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTA 158141 | || | | || || ||| | |||||||| | |||||||| || || |||| | Sbjct 1918120 CAGCTGTTATTGTTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGAA 1918179 Query 158142 TGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACA 158201 ||||| | || || | ||||||||| || | ||| ||||||| || || || || | Sbjct 1918180 TGCCTTTAGGAATTTATGGTACTTTCAATTTTATGATTGTATTTCAGATTGAGCATAATA 1918239 Query 158202 TCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCT 158261 | |||||||| | || || || | |||| |||| ||||| || || || ||| Sbjct 1918240 TTCTTATGCATCAATTTCACGTGTTAAGTGTGACTGGTGTATTTGGCAACTCCCTATTCA 1918299 Query 158262 CTGCTAT 158268 |||||| Sbjct 1918300 GTGCTAT 1918306 >seq7 Length=51758522 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 158002 CTATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGT 158061 ||| ||||| ||||| || ||||| || ||| | |||||||| || ||||| ||| Sbjct 47750128 CTACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGT 47750187 Query 158062 AGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCA 158121 |||||||| ||||| || || || || | ||| || ||| | |||||||| | ||||| Sbjct 47750188 TGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCA 47750247 Query 158122 AGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 158181 ||| || || |||| ||||||| | || || ||||||||||| || | ||| |||| Sbjct 47750248 AGGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGT 47750307 Query 158182 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTT 158217 ||| || || || || || || |||||||| || || Sbjct 47750308 ATTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq1 Length=52205531 Score = 134 bits (148), Expect = 2e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 160087 CGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTC 160146 ||||| ||||| || ||||| || ||||| ||||| || || || ||| | ||||| || Sbjct 38350081 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 38350140 Query 160147 ATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCT 160206 ||||| ||||| || || | ||| |||||| || |||| | | ||| | || Sbjct 38350141 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCC 38350200 Query 160207 TTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAA 160266 | ||| | |||||||| |||||||| ||| || || | ||||| |||||||||||| Sbjct 38350201 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 38350260 Query 160267 TTTGAGACCTTCTACACCAAGAACATCCTATT 160298 |||||||| ||||||||||| || || || || Sbjct 38350261 TTTGAGACTTTCTACACCAAAAATATTCTCTT 38350292 >seq8 Length=59662532 Score = 120 bits (132), Expect = 3e-22 Identities = 181/258 (70%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 160069 TCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAG 160128 || ||||| ||||| || ||||| ||||| || ||||| || ||||| ||| | Sbjct 1232871 TCAATGGTTACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTCAT------ 1232818 Query 160129 CGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATT 160188 ||| | ||||| || ||||| ||||| || || | ||| |||| | || || Sbjct 1232817 ---TGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGAATGAGTGCTCTT 1232761 Query 160189 GGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGA 160248 || | | ||| | || | ||| | ||||||| |||||||| ||| || || | Sbjct 1232760 GGGGTGGTCGGTTTGGCCGTGAACTTATGTGCTTATGATTTCGTTTCTCAAGAAATCCGC 1232701 Query 160249 GCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGA 160308 ||||| ||| |||||||||||||||| ||| ||| ||| || || || || || |||| Sbjct 1232700 GCAGCGGAATATCCTGAATTTGAGACTTTCAACAACAAAAATATTCTCTTAAA--AAGGT 1232643 Query 160309 CTTCGTGCTTGGATGGCA 160326 ||||||| ||||||||| Sbjct 1232642 ATTCGTGCGTGGATGGCA 1232625 Score = 116 bits (128), Expect = 4e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 158523 GTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAG 158582 |||| || |||||||| ||| | ||||| |||| |||||||| | || |||||||| | Sbjct 31293220 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTG 31293279 Query 158583 ATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACT 158642 || | | ||||| ||| |||||||||||||| |||||||| ||||| || || || | Sbjct 31293280 ATATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAATT 31293339 Query 158643 TCCCACTGGATCTTGCTGC 158661 |||| || ||||| ||||| Sbjct 31293340 TCCCTCTAGATCTAGCTGC 31293358 >seq4 Length=45960019 Score = 120 bits (132), Expect = 3e-22 Identities = 138/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 160210 AACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTT 160269 ||| | |||||||| |||||||| ||| || || | ||| | ||||| |||||||| Sbjct 43482226 AACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGTGCATGA-AAGATTCTGAATTT 43482284 Query 160270 GAGACCTTCTACACCAAGAAC-ATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACC 160328 || || || ||||| || || || || || || ||||| ||||||| ||||||||| Sbjct 43482285 GATACTTTGTACACAAAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCAAT 43482344 Query 160329 TGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGC 160388 | ||||| || ||||||||| |||| ||||||||||| || ||||| | || ||||| Sbjct 43482345 TCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 43482404 Query 160389 ACT 160391 || Sbjct 43482405 TCT 43482407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573018928737600